CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045533_P001	Maize	nucleus	91.22	79.51
Zm00001d035965_P004	Maize	nucleus	85.89	71.92
TraesCS7A01G049100.1	Wheat	nucleus	78.68	67.84
TraesCS7D01G044200.1	Wheat	nucleus	78.06	67.66
TraesCS4A01G434900.1	Wheat	nucleus	77.43	66.58
HORVU7Hr1G008680.11	Barley	cytosol, mitochondrion, nucleus, vacuole	76.49	61.15
EES12787	Sorghum	nucleus	40.75	34.39
OQU85555	Sorghum	plastid	40.44	29.52
OQU76020	Sorghum	mitochondrion, nucleus	30.09	28.4
KXG31209	Sorghum	mitochondrion, nucleus	29.78	23.99
EER99361	Sorghum	nucleus	14.42	16.97
EER93679	Sorghum	nucleus	19.44	14.25
KXG28671	Sorghum	nucleus	16.3	14.02
EER90936	Sorghum	nucleus	24.45	12.98

Protein Annotations

MapMan:15.5.52.1	EntrezGene:8066917	UniProt:C5Z2U9	EnsemblPlants:EER89089	ProteinID:EER89089	ProteinID:EER89089.2
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:IPR014977
PFAM:PF08879	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF7	EnsemblPlantsGene:SORBI_3010G013500	UniParc:UPI0009DC8825
InterPro:WRC_dom	RefSeq:XP_002437722.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:1130361..1133507

Molecular Weight (calculated)

34251.6 Da

IEP (calculated)

9.061

GRAVY (calculated)

-0.697

Length

319 amino acids

Sequence
(BLAST)

001: MAGVPVPPDL LLPVRPGPHS AAAAFSFAGP AASPFYHHHH HPSLSYYAYY GKKLDPEPWR CRRTDGKKWR CSKEAHPDSK YCERHMHRGR NRSRKPVESK
101: TASPAHPSQP QLSTVTTTTR EAAAAAPLES LAAAGGKAHG LSLGGGAGSS HLNVDASNAH YRYGSKYPIG AKSDASELSF FSGASGNSRG FTIDSPSDNS
201: WHSLPSNVPP FTLSKGRDSG LLPGAYSYSH IEPPQELGQV TIASLSQEQE RQPFSSGGAG AGAGGLLGNV KQENQPLRPF FDEWPGTRDS WSEMDDARSN
301: RTSFSTTQLS ISIPMPRCD

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.