CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	EER90925	AT5G28640.1	15326298
AT4G37740.1	EER90925	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007465_P001	Maize	nucleus	76.82	91.35
HORVU4Hr1G037480.5	Barley	nucleus	52.29	59.15
CDY55116	Canola	nucleus	27.22	35.82
GSMUA_Achr3P15140_001	Banana	nucleus	44.47	33.81
CDY66422	Canola	nucleus	28.03	33.23
GSMUA_AchrUn_...	Banana	nucleus	28.57	31.09
CDX83200	Canola	nucleus	31.81	29.95
EER90936	Sorghum	nucleus	45.55	28.12
GSMUA_Achr1P27000_001	Banana	nucleus	32.08	28.07
CDX72654	Canola	nucleus	32.88	27.6
CDY29584	Canola	nucleus	30.19	27.45
GSMUA_Achr7P27480_001	Banana	nucleus	43.67	26.69
Bra017851.1-P	Field mustard	nucleus	32.08	26.62
GSMUA_Achr8P04970_001	Banana	nucleus	41.24	26.33
VIT_18s0001g08650.t01	Wine grape	nucleus	42.86	26.32
Bra011781.1-P	Field mustard	nucleus	31.81	26.16
CDX75672	Canola	nucleus	31.54	25.94
CDX69322	Canola	nucleus	31.27	25.16
AT2G22840.1	Thale cress	nucleus	35.85	25.09
Bra000575.1-P	Field mustard	nucleus	34.77	24.9
AT4G37740.1	Thale cress	nucleus	34.77	24.11
Solyc04g077510.2.1	Tomato	nucleus	38.27	23.87
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	38.01	23.62
KRG88739	Soybean	nucleus	37.47	23.4
KRH05542	Soybean	nucleus	36.66	22.67
KRG88736	Soybean	nucleus	36.39	22.54
KRH05543	Soybean	nucleus	36.93	22.5
OQU76020	Sorghum	mitochondrion, nucleus	20.22	22.19
EER93679	Sorghum	nucleus	24.26	20.69
EES12787	Sorghum	nucleus	20.22	19.84
CDY21475	Canola	nucleus	26.42	19.72
OQU85555	Sorghum	plastid	22.64	19.22
KXG31209	Sorghum	mitochondrion, nucleus	20.22	18.94
EER99361	Sorghum	nucleus	13.48	18.45
EER89089	Sorghum	cytosol, mitochondrion, nucleus	14.02	16.3
GSMUA_Achr8P26530_001	Banana	nucleus	46.63	12.06

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A1B6PSN1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EnsemblPlants:KXG28671	ProteinID:KXG28671
ProteinID:KXG28671.1	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF6	SMART:SM00951	EnsemblPlantsGene:SORBI_3005G150900	UniParc:UPI0001C80D3D	InterPro:WRC_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:61984980..61988110

Molecular Weight (calculated)

40014.8 Da

IEP (calculated)

8.588

GRAVY (calculated)

-0.504

Length

371 amino acids

Sequence
(BLAST)

001: MERGGRDVFL GPTPPPPPSC PFHGSATAAR SGGAQMLSFS SSSPSNGAVG LGLCSGASKM QSVLSRVRGP FTPTQWMELE HQALIYKHFA VNAPVPSSLL
101: LPIKRSLNPW SSLGSSSLGW APFRSGSGDA EPGRCRRTDG KKWRCSRDAV GDQKYCERHI KRGCHRSRKH VEGRKATPTI ADPTMVVSGG SLLYSHAVTW
201: QQQAKSSAAN VADPFSLGSN RNLLDKQNIG DQFSVSTSMD SFDFSASHSS PNHDKVAFSP VEMQHEHDQL YLVHGAGSSA EHVNKSQDGQ LLVSRETIDD
301: GPLGEVFKGK SCQSASADIL TDQWTSTCEL HSPTGILQMS SSNRVTVENH TSNNSYLMAR MVNSHTVPTL H

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.