Factsheet for GSMUA_Achr1P27000_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr8P20680_001
GSMUA_Achr9P10760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	GSMUA_Achr10P...	AT5G28640.1	15326298
AT2G22840.1	GSMUA_Achr8P20680_001	AT5G28640.1	15326298
AT2G22840.1	GSMUA_Achr9P10760_001	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr10P...	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr8P20680_001	AT5G28640.1	15326298
AT4G37740.1	GSMUA_Achr9P10760_001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32310_001	Banana	nucleus	17.92	52.41
Os03t0729500-01	Rice	nucleus	47.17	43.86
CDY55116	Canola	nucleus	27.83	41.84
CDX83200	Canola	nucleus	36.56	39.34
GSMUA_AchrUn_...	Banana	nucleus	30.42	37.83
Os12t0484900-01	Rice	nucleus, plastid	36.79	37.77
CDY66422	Canola	nucleus	27.83	37.7
Zm00001d007465_P001	Maize	nucleus	27.59	37.5
GSMUA_Achr5P20170_001	Banana	extracellular	15.09	37.43
GSMUA_Achr8P04970_001	Banana	nucleus	51.18	37.35
GSMUA_Achr3P15140_001	Banana	nucleus	42.69	37.09
GSMUA_Achr7P27480_001	Banana	nucleus	51.18	35.75
TraesCS4D01G059600.1	Wheat	nucleus	45.05	33.05
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	15.8	32.68
Zm00001d033876_P004	Maize	nucleus	45.52	32.55
EER90936	Sorghum	nucleus	45.99	32.45
KXG28671	Sorghum	nucleus	28.07	32.08
TraesCS4B01G060000.1	Wheat	nucleus	45.75	31.75
HORVU4Hr1G010080.2	Barley	nucleus	45.52	31.69
TraesCS4A01G255000.1	Wheat	nucleus	45.05	31.47
GSMUA_Achr8P12060_001	Banana	extracellular	14.86	31.19
CDX72654	Canola	nucleus	32.08	30.77
Bra017851.1-P	Field mustard	nucleus	32.31	30.65
CDX75672	Canola	nucleus	32.31	30.38
Bra011781.1-P	Field mustard	nucleus	32.08	30.16
CDX69322	Canola	nucleus	32.78	30.15
Bra000575.1-P	Field mustard	nucleus	36.79	30.12
AT2G22840.1	Thale cress	nucleus	37.26	29.81
Zm00001d013346_P001	Maize	nucleus	40.8	29.57
CDY29584	Canola	nucleus	27.83	28.92
HORVU4Hr1G037480.5	Barley	nucleus	21.93	28.35
GSMUA_Achr10P...	Banana	nucleus	21.93	27.6
AT4G37740.1	Thale cress	nucleus	34.67	27.48
GSMUA_Achr6P01270_001	Banana	nucleus	21.7	27.38
GSMUA_Achr7P02330_001	Banana	nucleus	21.93	27.03
GSMUA_Achr8P07650_001	Banana	extracellular	20.05	26.9
GSMUA_Achr8P30640_001	Banana	nucleus	20.28	26.88
GSMUA_Achr1P23840_001	Banana	nucleus	22.17	26.18
GSMUA_Achr1P21940_001	Banana	nucleus	21.7	24.27
GSMUA_Achr3P22790_001	Banana	nucleus	22.17	23.98
GSMUA_Achr2P04650_001	Banana	extracellular	24.06	23.67
GSMUA_AchrUn_...	Banana	nucleus	22.17	22.87
CDY21475	Canola	nucleus	23.11	19.72
GSMUA_Achr8P26530_001	Banana	nucleus	52.83	15.62

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
EnsemblPlantsGene:GSMUA_Achr1G27000_001	EnsemblPlants:GSMUA_Achr1P27000_001	EnsemblPlants:GSMUA_Achr1T27000_001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M0S3F7	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF40	SMART:SM00951	UniParc:UPI0002960D37	InterPro:WRC_dom	SEG:seg	:

Description

growth-regulating factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G27000_001]

Coordinates

chr1:-:23461060..23463774

Molecular Weight (calculated)

46293.9 Da

IEP (calculated)

6.920

GRAVY (calculated)

-0.562

Length

424 amino acids

Sequence
(BLAST)

001: MHGVRGPFAP SQWLELERQA LIYKYIVAYV AIPPNLLIPI RTSLSPSGFS PFSVGSFGSS TLGWGSYHQR YTGNDDPEPG RCRRTDGKKW RCSKDAVADQ
101: RYCERHLNRG RHRSRKRVEG CTRHGSEAIA IVPLQSASAI SGSRTSDNLP TSQHQAANLE TNINGCCPAQ FDRMPMSKGN VNERAQESEG LSMRGFLRSR
201: PMSDLFPVSE EHNPFEETPS GVKLGHVSMD SLFNDSSSTS SDNISSYITT ANLNDQQKRP HPLQCFNDES DHSNISWSGV EMQSDRTQSS ISFPMACSPC
301: NSSAEYDPIN VGLRVGVPCK VSKCQTGWLP ISPESSMAGP LGEVLNRTSS TIKQQINFLT DTCDFSPWLE SSPTGVLQKV LFGSVSSSTG SSPGAENSKA
401: HKSNGSLCED VFGSTLEDLH TIPS

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.