Factsheet for GSMUA_Achr1P21940_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30640_001	Banana	nucleus	55.15	65.31
GSMUA_Achr5P20170_001	Banana	extracellular	17.15	38.01
GSMUA_Achr7P02330_001	Banana	nucleus	34.04	37.5
VIT_09s0002g01350.t01	Wine grape	nucleus	35.62	37.19
KRH47599	Soybean	nucleus	32.72	35.94
VIT_11s0016g01250.t01	Wine grape	nucleus	36.41	35.66
Solyc07g041640.2.1	Tomato	nucleus	31.66	34.88
KRH12524	Soybean	nucleus	33.51	34.79
CDY70432	Canola	nucleus	22.16	34.57
KRH02627	Soybean	nucleus	34.3	34.48
KRH37478	Soybean	nucleus	32.98	34.25
Os06t0204800-00	Rice	nucleus	27.18	34.22
KRH06183	Soybean	nucleus	32.45	34.17
KRH19281	Soybean	nucleus	34.56	34.11
GSMUA_Achr10P...	Banana	nucleus	30.08	33.83
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	17.94	33.17
AT2G06200.2	Thale cress	endoplasmic reticulum, plasma membrane	24.27	32.51
GSMUA_Achr6P01270_001	Banana	nucleus	28.76	32.44
OQU76020	Sorghum	mitochondrion, nucleus	28.76	32.25
GSMUA_Achr1P23840_001	Banana	nucleus	30.08	31.75
GSMUA_Achr4P32310_001	Banana	nucleus	12.14	31.72
GSMUA_Achr8P12060_001	Banana	extracellular	16.62	31.19
TraesCS7A01G165600.1	Wheat	nucleus	25.33	31.07
Os02t0776900-01	Rice	mitochondrion, nucleus	32.19	30.73
TraesCS7B01G070200.1	Wheat	nucleus	25.59	30.7
HORVU7Hr1G034610.4	Barley	mitochondrion	25.33	30.67
Zm00001d018260_P001	Maize	mitochondrion	30.08	30.32
TraesCS7D01G166400.1	Wheat	nucleus	25.59	30.31
PGSC0003DMT400033847	Potato	nucleus	21.37	30.0
Zm00001d052112_P001	Maize	mitochondrion, nucleus	31.4	29.68
Zm00001d037117_P001	Maize	mitochondrion, nucleus	28.76	29.62
KXG31209	Sorghum	mitochondrion, nucleus	30.87	29.55
TraesCS6A01G335900.1	Wheat	nucleus	30.34	28.12
HORVU6Hr1G081210.1	Barley	nucleus	30.61	28.09
TraesCS6B01G366700.1	Wheat	nucleus	30.34	28.05
TraesCS6D01G315700.1	Wheat	nucleus	30.61	28.02
Zm00001d000238_P001	Maize	nucleus	28.76	27.81
GSMUA_AchrUn_...	Banana	nucleus	30.08	27.74
GSMUA_Achr2P04650_001	Banana	extracellular	29.82	26.22
GSMUA_Achr3P22790_001	Banana	nucleus	25.33	24.49
GSMUA_Achr8P07650_001	Banana	extracellular	20.32	24.37
CDY33407	Canola	nucleus	24.54	23.25
Bra015184.1-P	Field mustard	nucleus	24.54	23.25
GSMUA_Achr1P27000_001	Banana	nucleus	24.27	21.7
GSMUA_AchrUn_...	Banana	nucleus	17.94	19.94
GSMUA_Achr3P15140_001	Banana	nucleus	23.48	18.24
GSMUA_Achr8P04970_001	Banana	nucleus	27.44	17.9
GSMUA_Achr7P27480_001	Banana	nucleus	25.07	15.65
GSMUA_Achr8P26530_001	Banana	nucleus	25.59	6.76

Protein Annotations

MapMan:15.5.52.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	EnsemblPlantsGene:GSMUA_Achr1G21940_001	EnsemblPlants:GSMUA_Achr1P21940_001	EnsemblPlants:GSMUA_Achr1T21940_001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977
InterPro:IPR014978	UniProt:M0S202	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF4	SMART:SM00951	UniParc:UPI0002961CCE	InterPro:WRC_dom	SEG:seg

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G21940_001]

Coordinates

chr1:+:16449682..16450976

Molecular Weight (calculated)

42421.4 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.479

Length

379 amino acids

Sequence
(BLAST)

001: MVVGGGSRYP FTASQWQELE LQALIFKYMV SGIPVPPDLI LCIRRSLFVE PQTLPFLPHR PTVGWEAYQV GDGRKAVDPE PGRCRRTDGK KWRCSKEAFP
101: DSKYCERHMH RGKSRSRKPV ELSLATTPIS SHFPPPTAPP PPPPPLSLST PHHTHHFLFP CSSSSSSSSS SSSSSSSRPP PMMAHSQQDD SSGYRYAILG
201: FRQDVNEHPF FSEACRGGRE MPFRLGPVEV SSPEQTKQRH VHMQSSRSHI GVCLWVVQEE EKHYFVLGAD FKTQRKGEAE REEPAQNLRP FHCFLDEKPS
301: TVVDSWLGMA VDQSKQAPDL KTRLSITIPV ANHDMPVTAP PCYSGATLAA CSTLLLRFSS SYTFFSSFTS LPFLMQMVE

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.