Factsheet for VIT_11s0016g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g01350.t01	Wine grape	nucleus	51.42	54.82
KRH47599	Soybean	nucleus	42.89	48.12
KRH06183	Soybean	nucleus	43.15	46.39
VIT_16s0039g01450.t01	Wine grape	nucleus	37.98	46.23
PGSC0003DMT400033847	Potato	nucleus	30.75	44.07
GSMUA_Achr8P30640_001	Banana	nucleus	33.33	40.31
VIT_02s0025g02680.t01	Wine grape	nucleus	18.09	39.11
Os06t0204800-00	Rice	nucleus	30.23	38.87
Os02t0776900-01	Rice	mitochondrion, nucleus	38.24	37.28
VIT_02s0025g04910.t01	Wine grape	nucleus	19.9	36.84
GSMUA_Achr1P21940_001	Banana	nucleus	35.66	36.41
OQU76020	Sorghum	mitochondrion, nucleus	31.78	36.39
KXG31209	Sorghum	mitochondrion, nucleus	36.95	36.11
Zm00001d018260_P001	Maize	mitochondrion	34.88	35.9
TraesCS6A01G335900.1	Wheat	nucleus	37.73	35.7
HORVU6Hr1G081210.1	Barley	nucleus	37.98	35.59
TraesCS6B01G366700.1	Wheat	nucleus	37.47	35.37
TraesCS6D01G315700.1	Wheat	nucleus	37.73	35.27
Zm00001d052112_P001	Maize	mitochondrion, nucleus	35.66	34.41
GSMUA_Achr7P02330_001	Banana	nucleus	29.46	33.14
HORVU7Hr1G034610.4	Barley	mitochondrion	26.61	32.91
TraesCS7B01G070200.1	Wheat	nucleus	26.61	32.59
TraesCS7A01G165600.1	Wheat	nucleus	25.84	32.36
TraesCS7D01G166400.1	Wheat	nucleus	26.36	31.88
Zm00001d037117_P001	Maize	mitochondrion, nucleus	30.23	31.79
Zm00001d000238_P001	Maize	nucleus	31.78	31.38
VIT_08s0007g03760.t01	Wine grape	nucleus	22.22	20.77
VIT_18s0001g08650.t01	Wine grape	nucleus	29.46	18.87
VIT_00s0494g00010.t01	Wine grape	nucleus	28.94	18.76
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	19.38	18.66
VIT_16s0098g01080.t01	Wine grape	nucleus	19.9	13.37

Protein Annotations

EntrezGene:100261173	wikigene:100261173	MapMan:15.5.52.1	ProteinID:CBI27820	ProteinID:CBI27820.3	UniProt:D7TCG2
EMBL:FN595756	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EntrezGene:LOC100261173	wikigene:LOC100261173	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF4	SMART:SM00951
UniParc:UPI0001BE33F7	ArrayExpress:VIT_11s0016g01250	EnsemblPlantsGene:VIT_11s0016g01250	EnsemblPlants:VIT_11s0016g01250.t01	InterPro:WRC_dom	RefSeq:XP_002278189
RefSeq:XP_002278189.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:1000358..1001752

Molecular Weight (calculated)

44000.3 Da

IEP (calculated)

8.646

GRAVY (calculated)

-0.924

Length

387 amino acids

Sequence
(BLAST)

001: MMSGRNRFPF TATQWQELEH QALIFKYMAS GMPIPPDLIF SIKRSLDSPL PTSKLFPTHQ SQHIGWNCFQ MGLGRKVDPE PGRCRRTDGK KWRCAKEAYP
101: DSKYCERHMH RGRNRSRKPV EVMTPSKTPP TVTTPTATMA ANPPPPISSI TVNSSNPTSY SLALETQNHH THRHPSCYNT HLHLPFLYPH SSSSRPPGFG
201: GGVELSPQHN TTHLLLDSGS YSQTDYRNRY VHGLKEEVDE HAFFSEQPSG ATRSFSGSSM DDPWRLTPLK MNSSPLDHSK QRSCSVLQSD YSCLQLQSLS
301: DTSNQKQDQH FYVLGSNLKY EKHEREEPEK TVHRFFDEWP PKSRDPWPDS EDKSPRDALV STTQLSISMP NSSFDFSISN SRPHNGS

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.