Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g02950.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13960.1 | VIT_07s0005g02950.t01 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g01250.t01 | Wine grape | nucleus | 54.82 | 51.42 |
| GSMUA_Achr8P30640_001 | Banana | nucleus | 37.74 | 42.81 |
| PGSC0003DMT400033847 | Potato | nucleus | 31.68 | 42.59 |
| VIT_16s0039g01450.t01 | Wine grape | nucleus | 36.91 | 42.14 |
| Os02t0776900-01 | Rice | mitochondrion, nucleus | 44.35 | 40.55 |
| Bra001532.1-P | Field mustard | nucleus | 39.94 | 39.94 |
| Zm00001d018260_P001 | Maize | mitochondrion | 41.32 | 39.89 |
| CDX71979 | Canola | nucleus | 42.15 | 39.74 |
| CDX82503 | Canola | nucleus | 39.67 | 39.34 |
| CDY39081 | Canola | nucleus | 42.98 | 39.2 |
| CDX75742 | Canola | nucleus | 39.12 | 38.9 |
| AT3G13960.1 | Thale cress | nucleus | 42.42 | 38.79 |
| CDY55209 | Canola | nucleus | 41.6 | 38.72 |
| CDX97531 | Canola | nucleus | 41.32 | 38.66 |
| KXG31209 | Sorghum | mitochondrion, nucleus | 42.15 | 38.64 |
| Os06t0204800-00 | Rice | nucleus | 31.68 | 38.21 |
| Bra027384.1-P | Field mustard | nucleus | 41.05 | 38.11 |
| HORVU6Hr1G081210.1 | Barley | nucleus | 42.15 | 37.05 |
| TraesCS6A01G335900.1 | Wheat | nucleus | 41.6 | 36.92 |
| VIT_02s0025g04910.t01 | Wine grape | nucleus | 21.21 | 36.84 |
| TraesCS6B01G366700.1 | Wheat | nucleus | 41.6 | 36.83 |
| TraesCS6D01G315700.1 | Wheat | nucleus | 41.87 | 36.72 |
| Zm00001d052112_P001 | Maize | mitochondrion, nucleus | 39.94 | 36.16 |
| VIT_02s0025g02680.t01 | Wine grape | nucleus | 17.63 | 35.75 |
| GSMUA_Achr1P21940_001 | Banana | nucleus | 37.19 | 35.62 |
| OQU76020 | Sorghum | mitochondrion, nucleus | 32.51 | 34.91 |
| HORVU7Hr1G034610.4 | Barley | mitochondrion | 29.75 | 34.5 |
| GSMUA_Achr7P02330_001 | Banana | nucleus | 32.51 | 34.3 |
| TraesCS7A01G165600.1 | Wheat | nucleus | 28.65 | 33.66 |
| Bra021521.1-P | Field mustard | cytosol | 37.74 | 33.33 |
| TraesCS7B01G070200.1 | Wheat | nucleus | 28.93 | 33.23 |
| TraesCS7D01G166400.1 | Wheat | nucleus | 28.65 | 32.5 |
| Zm00001d037117_P001 | Maize | mitochondrion, nucleus | 31.13 | 30.71 |
| Zm00001d000238_P001 | Maize | nucleus | 32.51 | 30.1 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 23.14 | 20.29 |
| VIT_00s0494g00010.t01 | Wine grape | nucleus | 31.41 | 19.1 |
| VIT_18s0001g08650.t01 | Wine grape | nucleus | 31.41 | 18.87 |
| VIT_15s0048g01740.t01 | Wine grape | nucleus, plasma membrane | 19.83 | 17.91 |
| VIT_16s0098g01080.t01 | Wine grape | nucleus | 20.66 | 13.02 |
Protein Annotations
| MapMan:15.5.52.1 | ProteinID:CCB59297 | ProteinID:CCB59297.1 | UniProt:F6HXX2 | EMBL:FN596494 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | GO:GO:0048366 | InterPro:GRF |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF38 | SMART:SM00951 | UniParc:UPI000210A75F | ArrayExpress:VIT_09s0002g01350 |
| EnsemblPlantsGene:VIT_09s0002g01350 | EnsemblPlants:VIT_09s0002g01350.t01 | InterPro:WRC_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr9:+:1135177..1136542
Molecular Weight (calculated)
40944.6 Da
IEP (calculated)
8.645
GRAVY (calculated)
-0.848
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMSARNRSP FTASQWQELE HQALIFKYIV SGVPIPADLI CTVKRSLDSS LSSRLFPHQP IGWGCFQMGF GRKADPEPGR CRRTDGKKWR CSKEAYPDSK
101: YCERHMHRGK NRSRKPVEVI SATNPSPTIS SINSNPSSTT TNSYSLSPLS PLSSSMTSET SHPHHHSYHN TSLYPFLYPH PSSSRPPGSC LSPQATSSYS
201: THHLFLDSGS YSQADRDYRH HHGMREGVDE RAFFPEASGT VRGLHDSYTP LTMSSSKGYS HFQYQSPADN PKQQQEQQEQ QHCFVLGTDF KSSRPIKVER
301: DGEAQKPLHH FFGEWPLKNR DSWLDLEEDP PTHASFSTTQ LSISIPMSSH KLLASDSRIQ TGT
101: YCERHMHRGK NRSRKPVEVI SATNPSPTIS SINSNPSSTT TNSYSLSPLS PLSSSMTSET SHPHHHSYHN TSLYPFLYPH PSSSRPPGSC LSPQATSSYS
201: THHLFLDSGS YSQADRDYRH HHGMREGVDE RAFFPEASGT VRGLHDSYTP LTMSSSKGYS HFQYQSPADN PKQQQEQQEQ QHCFVLGTDF KSSRPIKVER
301: DGEAQKPLHH FFGEWPLKNR DSWLDLEEDP PTHASFSTTQ LSISIPMSSH KLLASDSRIQ TGT
001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
Arabidopsis Description
GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.