Factsheet for VIT_07s0005g02950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0494g00010.t01
VIT_08s0007g03760.t01
VIT_09s0002g01350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	VIT_00s0494g00010.t01	AT2G22840.1	15326298
AT5G28640.1	VIT_09s0002g01350.t01	AT3G13960.1	15960617
AT5G28640.1	VIT_08s0007g03760.t01	AT3G52910.1	15960617
AT5G28640.1	VIT_00s0494g00010.t01	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0081g00200.t01	Wine grape	nucleus	61.61	61.88
Solyc04g009820.2.1	Tomato	nucleus	53.57	57.69
Bra020616.1-P	Field mustard	nucleus	51.79	56.86
Bra036131.1-P	Field mustard	nucleus	51.34	56.65
CDY33883	Canola	nucleus	51.79	56.59
Bra010002.1-P	Field mustard	nucleus	50.89	56.16
PGSC0003DMT400065405	Potato	nucleus	53.57	56.07
AT5G28640.1	Thale cress	nucleus	51.79	55.24
CDY05600	Canola	nucleus	50.0	54.37
CDY00027	Canola	nucleus	48.66	53.69
CDY57020	Canola	nucleus	48.66	53.69
GSMUA_Achr10P...	Banana	nucleus	50.0	52.34
PGSC0003DMT400002573	Potato	nucleus	51.79	52.02
Solyc11g006230.1.1	Tomato	nucleus	50.89	51.35
GSMUA_Achr8P20680_001	Banana	nucleus	48.66	50.23
CDX86202	Canola	endoplasmic reticulum, extracellular	20.98	48.96
TraesCS4B01G064000.1	Wheat	nucleus	45.98	45.78
TraesCS4D01G062900.1	Wheat	nucleus	45.54	45.33
TraesCS4A01G250600.1	Wheat	nucleus	44.64	44.25
Os03t0733600-01	Rice	nucleus	44.2	43.61
GSMUA_Achr9P10760_001	Banana	cytosol	45.98	42.92
EER90925	Sorghum	nucleus	41.96	41.78
Zm00001d033905_P001	Maize	nucleus	40.18	39.65
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	41.96	38.21
VIT_16s0098g01110.t01	Wine grape	cytosol, mitochondrion, nucleus	33.48	37.13
VIT_15s0048g02770.t01	Wine grape	nucleus	34.38	34.68

Protein Annotations

EntrezGene:100244659	wikigene:100244659	MapMan:15.5.52.2	EMBL:AM489368	ProteinID:CAN79912	ProteinID:CAN79912.1
ProteinID:CBI37082	ProteinID:CBI37082.3	UniProt:D7U2W6	EMBL:FN596502	GO:GO:0003674	GO:GO:0003713
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506
GO:GO:1903508	EntrezGene:LOC100244659	wikigene:LOC100244659	PFAM:PF05030	PANTHER:PTHR23107	PANTHER:PTHR23107:SF15
InterPro:SS18_fam	UniParc:UPI00015CCFA5	ArrayExpress:VIT_07s0005g02950	EnsemblPlantsGene:VIT_07s0005g02950	EnsemblPlants:VIT_07s0005g02950.t01	unigene:Vvi.15860
RefSeq:XP_002262678	RefSeq:XP_002262678.1	RefSeq:XP_010652355.1	RefSeq:XP_019076813.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:5695957..5701671

Molecular Weight (calculated)

24237.9 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.522

Length

224 amino acids

Sequence
(BLAST)

001: MQQHLMQMQP MMAGSHNLSN ITTDHIQQYL DENKSLILKI LESQNSGKLS ECAENQARLQ RNLMYLAAIA DCQPQPPSLQ AQFSPNMVMQ PGVNYMQHQQ
101: SQQMMPQSLM AARAPMLYAQ QHPYLALQQQ QALQSQLGMS STGMGGIHML QSEPNVGGNG TGAFSDLGRS MTGEGLSAVS RGLGSASKQD VGSVGSAEGR
201: RGYLGGQGAD KGEALYFKSA EERD

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.