Factsheet for VIT_00s0494g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g02950.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	VIT_07s0005g02950.t01	AT5G28640.1	15326298
AT4G37740.1	VIT_07s0005g02950.t01	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g08650.t01	Wine grape	nucleus	62.14	61.42
CDY55116	Canola	nucleus	27.14	57.45
CDX83200	Canola	nucleus	36.85	55.84
CDY66422	Canola	nucleus	27.97	53.35
Bra000575.1-P	Field mustard	nucleus	45.23	52.12
PGSC0003DMT400055151	Potato	nucleus	51.76	51.59
AT2G22840.1	Thale cress	nucleus	45.73	51.51
Solyc02g092070.2.1	Tomato	nucleus	47.74	50.18
Bra011781.1-P	Field mustard	nucleus	36.68	48.56
CDX75672	Canola	nucleus	36.52	48.34
CDX72654	Canola	nucleus	35.34	47.74
Bra017851.1-P	Field mustard	nucleus	35.68	47.65
CDY29584	Canola	nucleus	32.33	47.3
CDX69322	Canola	nucleus	36.52	47.29
AT4G37740.1	Thale cress	nucleus	40.87	45.61
VIT_02s0025g02680.t01	Wine grape	nucleus	12.23	40.78
VIT_02s0025g04910.t01	Wine grape	nucleus	13.57	38.76
VIT_16s0039g01450.t01	Wine grape	nucleus	20.6	38.68
CDY21475	Canola	nucleus	31.16	37.42
VIT_09s0002g01350.t01	Wine grape	nucleus	19.1	31.41
VIT_08s0007g03760.t01	Wine grape	nucleus	20.94	30.19
VIT_11s0016g01250.t01	Wine grape	nucleus	18.76	28.94
VIT_16s0098g01080.t01	Wine grape	nucleus	26.97	27.95
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	12.9	19.15

Protein Annotations

EntrezGene:100853530	wikigene:100853530	MapMan:15.5.52.1	EMBL:AM488616	ProteinID:CAN62265	ProteinID:CAN62265.1
ProteinID:CCB57297	ProteinID:CCB57297.1	UniProt:F6HRI9	EMBL:FN596021	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
EntrezGene:LOC100853530	wikigene:LOC100853530	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951	UniParc:UPI0002109149	ArrayExpress:VIT_00s0494g00010	EnsemblPlantsGene:VIT_00s0494g00010
EnsemblPlants:VIT_00s0494g00010.t01	unigene:Vvi.21811	InterPro:WRC_dom	RefSeq:XP_003635376	RefSeq:XP_003635376.1	SEG:seg

Description

No Description!

Coordinates

chrUn:-:30596520..30600278

Molecular Weight (calculated)

64121.6 Da

IEP (calculated)

6.246

GRAVY (calculated)

-0.514

Length

597 amino acids

Sequence
(BLAST)

001: MDFGLVGLEG LVGPEDVAPS QVAETETKQM GLGSGLGKQE ISGSLQDDWA DSKMARTDDF GASITMSLQH GTSLLRSNSL LSDDGGAQQH MLSFSSPKSE
101: MSFLGKDGRL VDRGAKTTAF PYYQPTPSAY NRNAGFGSGS LNTSMHGAFA GVRGPFTPSQ WIELEHQALI YKYITANVPV PSNLLIPIRK SLNPFGLSGS
201: SSTSLAHNSL SWGSFHLGFS GNTDPEPGRC RRTDGKKWRC SRDAVADQKY CERHINRGRH RSRKPVEGQT GHAVSGPTNS KVVPMPSTMS ASVMSSGGAS
301: NSLAIAQNQF KSLQPVAANP SADTLVNRLQ EPQGLSMISP TVDLKSRDTP FSISKLPIPF EESPQSEFGF VSSDSLLNPS ERGSYMNSRN YTPFLDFSDQ
401: ETQDQHPFRQ FIDDWPKDQS NRSDIAWPEE LKSDWTQLSI SIPMSSSDFS SSSSSPTQEK LAFSPLRLSR ELDPVQMGLG VSSDLSAPTQ KQTNWIPISW
501: GSSMGGPLGE VLTTSANNMG ACKNSSALNL MTEGWDGSPQ IGSSPTGVLQ KATFGSLSNS SSGSSPTTEN KKIHERASHC EDMLGSTLAT SSSIPSL

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.