Factsheet for PGSC0003DMT400055151

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002573
PGSC0003DMT400065405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	PGSC0003DMT400002573	AT5G28640.1	15326298
AT2G22840.1	PGSC0003DMT400065405	AT5G28640.1	15326298
AT4G37740.1	PGSC0003DMT400002573	AT5G28640.1	15326298
AT4G37740.1	PGSC0003DMT400065405	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092070.2.1	Tomato	nucleus	87.31	92.08
CDY55116	Canola	nucleus	26.21	55.67
VIT_00s0494g00010.t01	Wine grape	nucleus	51.59	51.76
CDY66422	Canola	nucleus	27.05	51.76
CDX83200	Canola	nucleus	33.39	50.76
Bra017851.1-P	Field mustard	nucleus	34.39	46.09
CDY29584	Canola	nucleus	31.39	46.08
CDX72654	Canola	nucleus	33.72	45.7
CDX75672	Canola	nucleus	34.06	45.23
Bra011781.1-P	Field mustard	nucleus	34.06	45.23
Bra000575.1-P	Field mustard	nucleus	39.07	45.17
CDX69322	Canola	nucleus	33.72	43.82
AT2G22840.1	Thale cress	nucleus	38.4	43.4
AT4G37740.1	Thale cress	nucleus	37.4	41.87
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	41.57	41.71
CDY21475	Canola	nucleus	26.54	31.99
PGSC0003DMT400009997	Potato	nucleus	6.18	30.33
PGSC0003DMT400075563	Potato	nucleus	17.7	30.29
PGSC0003DMT400047580	Potato	nucleus	17.7	30.03
PGSC0003DMT400072628	Potato	nucleus	18.86	28.9
PGSC0003DMT400079338	Potato	nucleus	14.69	27.67
PGSC0003DMT400033847	Potato	nucleus	11.69	25.93
PGSC0003DMT400008352	Potato	nucleus	19.37	25.84
PGSC0003DMT400033246	Potato	nucleus	15.53	22.14
PGSC0003DMT400031893	Potato	nucleus	14.86	21.09

Protein Annotations

EntrezGene:102595967	MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:M1BXF0	PFAM:PF08879
PFAM:PF08880	EnsemblPlantsGene:PGSC0003DMG400021403	PGSC:PGSC0003DMG400021403	EnsemblPlants:PGSC0003DMT400055151	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951	UniParc:UPI0002964F73	InterPro:WRC_dom	RefSeq:XP_006363835.1
SEG:seg	:	:	:	:	:

Description

GRF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400021403]

Coordinates

chr2:+:42510285..42514913

Molecular Weight (calculated)

64525.9 Da

IEP (calculated)

7.616

GRAVY (calculated)

-0.533

Length

599 amino acids

Sequence
(BLAST)

001: MDFGGLMTME AITSTAQQSE TSNGSGQLKQ QRSGACDDNI WRPSKVPKPA DDLSAFCKQQ GPTLFMRSDS PNDGRGHSTM LSFSSNKSEE IPFLCTNNVS
101: ARNLPFPLFD SGSYNTRAAS AYASGGSNES TPGSFSRFRG PFTPSQWMEL EHQALIYKHF VANIPVPHQL LTPIKKSLNP YAFSGLSADP YASNWGWGTF
201: HLGFAGNTDP EPGRCRRTDG KKWRCSREAV PDQKYCERHI NRGRHRSRKH VEVQNNHAVS GSTTSKVASV APSSSATVIS SSGTLLISDG ASNSLGTVQH
301: QSNSLQPSAA NPSTEQLVNR MLGHRGASVI SPTICVKPKD SAIAVQKQHN GVELSSQTDF GLVSSDSLLN PSQRNSFANP KNPIAFLDFN DHEQSEQHPV
401: HHFIDGWAKE QSSRTSTSWP GQLKDWTQLS MSIPMTASDF SSSSSSPRQE KLTLSPLRVS RDVDPIQMGL GMTSSYGEPM QKTANWVPVS WENSLGGPLG
501: EVLNSTAGYS GDGKSVSALN LGTEVWDNSP SFGSSPTGVL QKTTFVSLSN SSSGSSPRGD SKKVHEGIAM CDDVIGSTVA NSLCIPSVEV SCLIENKLH

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.