Factsheet for PGSC0003DMT400075563

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096070.1.1	Tomato	nucleus	94.86	96.23
PGSC0003DMT400079338	Potato	nucleus	70.57	77.67
PGSC0003DMT400047580	Potato	nucleus	71.43	70.82
VIT_16s0039g01450.t01	Wine grape	nucleus	52.86	58.18
KRH27682	Soybean	nucleus	46.29	52.6
GSMUA_Achr10P...	Banana	nucleus	50.0	51.93
KRH77798	Soybean	nucleus	46.86	51.57
KRH23984	Soybean	nucleus	46.57	48.95
KRH29333	Soybean	nucleus	47.43	48.68
GSMUA_Achr1P23840_001	Banana	nucleus	49.71	48.47
GSMUA_Achr2P04650_001	Banana	extracellular	51.43	41.76
GSMUA_AchrUn_...	Banana	nucleus	48.86	41.61
PGSC0003DMT400033847	Potato	nucleus	26.86	34.81
PGSC0003DMT400009997	Potato	nucleus	11.43	32.79
PGSC0003DMT400033246	Potato	nucleus	26.29	21.9
PGSC0003DMT400072628	Potato	nucleus	22.29	19.95
PGSC0003DMT400008352	Potato	nucleus	24.57	19.15
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	31.71	18.59
PGSC0003DMT400055151	Potato	nucleus	30.29	17.7
PGSC0003DMT400031893	Potato	nucleus	17.43	14.46

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:M1CVD7	PFAM:PF08879	PFAM:PF08880
EnsemblPlantsGene:PGSC0003DMG400029384	PGSC:PGSC0003DMG400029384	EnsemblPlants:PGSC0003DMT400075563	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF8	SMART:SM00951	UniParc:UPI000294EDBE	InterPro:WRC_dom	SEG:seg	:

Description

Growth-regulating factor 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400029384]

Coordinates

chr12:+:57874604..57878494

Molecular Weight (calculated)

39095.3 Da

IEP (calculated)

8.076

GRAVY (calculated)

-0.849

Length

350 amino acids

Sequence
(BLAST)

001: MAAENGYRPP FTAVQWQELE HQAMIYKYLV AGIPVPADLV VPIRRSFEPI SARFFHHPSL GYCSYYGKKF DPEPGRCRRT DGKKWRCAKD AYPDSKYCER
101: HMHRGRNRSR KHVESQSTAQ SLLTSMSHNT TGSSKTSGNF QRSSSGNFQR SSSESFQNTP LYSAANTEGP SYGSATTKMQ MEPATYAVDS KGYFHGMTAD
201: ADEQNFSLEA SAGTRSLGMG SNTDSMWCLM PPPQLPSSPM VKPKNDSQLL DSSRHIRMPN PFEPMNDTTI SGQHQHCFFS SDIGSPGTVK QEQRSMRPFF
301: DEWPTTKESW SNLDDEGSNK NNFSTTQLSI SIPMAPSDFS SRSSCSPNDA

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.