Factsheet for PGSC0003DMT400031893

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083230.1.1	Tomato	nucleus	79.86	84.67
VIT_02s0025g02680.t01	Wine grape	nucleus	18.25	43.02
Bra019244.1-P	Field mustard	nucleus	26.78	30.13
CDY10989	Canola	nucleus	26.78	30.05
CDY03485	Canola	nucleus	24.64	29.89
CDY72447	Canola	nucleus, plastid	23.93	29.36
CDX92617	Canola	nucleus	27.73	28.75
Bra013767.1-P	Field mustard	nucleus	24.88	28.3
PGSC0003DMT400009997	Potato	nucleus	7.11	24.59
AT4G24150.1	Thale cress	nucleus	27.01	23.12
PGSC0003DMT400072628	Potato	nucleus	18.48	19.95
PGSC0003DMT400047580	Potato	nucleus	16.35	19.55
PGSC0003DMT400008352	Potato	nucleus	20.62	19.38
PGSC0003DMT400079338	Potato	nucleus	13.51	17.92
PGSC0003DMT400075563	Potato	nucleus	14.46	17.43
PGSC0003DMT400033847	Potato	nucleus	10.9	17.04
PGSC0003DMT400033246	Potato	nucleus	16.59	16.67
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	22.04	15.58
PGSC0003DMT400055151	Potato	nucleus	21.09	14.86

Protein Annotations

EntrezGene:102587130	MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:M1AWF8	PFAM:PF08879
PFAM:PF08880	EnsemblPlantsGene:PGSC0003DMG400012233	PGSC:PGSC0003DMG400012233	EnsemblPlants:PGSC0003DMT400031893	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF2	SMART:SM00951	UniParc:UPI0002963D6E	InterPro:WRC_dom	RefSeq:XP_006343776.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012233]

Coordinates

chr8:+:56703487..56705475

Molecular Weight (calculated)

45993.3 Da

IEP (calculated)

7.712

GRAVY (calculated)

-0.763

Length

422 amino acids

Sequence
(BLAST)

001: MGNGENTEFL DLKMKTSEAS YPYKRTMFMA PSSHPHFFSP YEKETGDDGG SGPGNFVGSD VVSALSSRPC ARGSMGLAPF TASQLQEFQR QFIICKYIMA
101: SMPVPPHLLP TNPSPAQSNT TGLDLKFSSG SDPEPWRCKR TDGKKWRCSR DVTPDQKYCE RHAHKSKPRS RKPVEIHTNR HPPIPKSNNN SHSFQFPTVQ
201: LSAPSGDQTS PRCIEWLGRG DTSRTIPVVN TCNQQLMHSS SGMGFNNDQN RRNSPAFQVQ DAPKVYPMNF NQYMCNSSSD QALGSQLKNE QGNNSIIGRG
301: TTRNAWPKDG LSDGISNNGS FTSLTLSMSG WNRGMDDDNE HAQVSIGMLD SERSGDDVLR SQWLNPVSWM SSTAPGGPLG EALCLGNASS LPSPHGYSNS
401: TATSSCSFGS CENGSHGPDF IG

Best Arabidopsis Sequence Match ( AT4G24150.2 )
(BLAST)

001: MRMLLGIPYV DKSVLSNSVL ERGKQDKSKL LLVDKCHYEL DVEERKEDFV GGFGFGVVEN SHKDVMVLPH HHYYPSYSSP SSSSLCYCSA GVSDPMFSVS
101: SNQAYTSSHS GMFTPAGSGS AAVTVADPFF SLSSSGEMRR SMNEDAGAAF SEAQWHELER QRNIYKYMMA SVPVPPELLT PFPKNHQSNT NPDVTVAVAT
201: GGSLQLGIAS SASNNTADLE PWRCKRTDGK KWRCSRNVIP DQKYCERHTH KSRPRSRKHV ESSHQSSHHN DIRTAKNDTS QLVRTYPQFY GQPISQIPVL
301: STLPSASSPY DHHRGLRWFT KEDDAIGTLN PETQEAVQLK VGSSRELKRG FDYDLNFRQK EPIVDQSFGA LQGLLSLNQT PQHNQETRQF VVEGKQDEAM
401: GSSLTLSMAG GGMEETEGTN QHQWVSHEGP SWLYSTTPGG PLAEALCLGV SNNPSSSTTT SSCSRSSS

Arabidopsis Description

GRF8Growth-regulating factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.