Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10989 | Canola | nucleus | 82.56 | 89.36 |
| CDY03485 | Canola | nucleus | 57.99 | 67.82 |
| CDY72447 | Canola | nucleus, plastid | 55.77 | 65.99 |
| AT4G24150.1 | Thale cress | nucleus | 74.69 | 61.66 |
| VIT_02s0025g02680.t01 | Wine grape | nucleus | 18.92 | 43.02 |
| Solyc08g083230.1.1 | Tomato | nucleus | 27.76 | 28.39 |
| PGSC0003DMT400031893 | Potato | nucleus | 28.75 | 27.73 |
| CDY55116 | Canola | nucleus | 18.18 | 26.24 |
| CDY51791 | Canola | nucleus | 20.15 | 25.08 |
| CDY66422 | Canola | nucleus | 18.43 | 23.96 |
| CDY28823 | Canola | nucleus | 20.39 | 23.92 |
| CDX79674 | Canola | nucleus | 20.15 | 22.28 |
| CDX84560 | Canola | nucleus | 20.15 | 22.28 |
| CDX67545 | Canola | nucleus | 19.66 | 21.98 |
| CDX73595 | Canola | nucleus | 20.39 | 21.78 |
| CDY13333 | Canola | nucleus | 19.41 | 21.58 |
| CDX83200 | Canola | nucleus | 20.88 | 21.57 |
| CDX75039 | Canola | nucleus | 20.39 | 21.56 |
| CDX84126 | Canola | nucleus | 20.64 | 21.43 |
| CDX78132 | Canola | nucleus | 19.66 | 21.22 |
| CDY43721 | Canola | nucleus | 18.43 | 21.13 |
| CDY70432 | Canola | nucleus | 12.29 | 20.58 |
| CDY29584 | Canola | nucleus | 20.39 | 20.34 |
| CDX75672 | Canola | nucleus | 21.87 | 19.73 |
| CDX76249 | Canola | nucleus | 19.41 | 19.32 |
| CDX72654 | Canola | nucleus | 20.88 | 19.23 |
| CDX69322 | Canola | nucleus | 21.62 | 19.09 |
| CDX71979 | Canola | nucleus | 15.72 | 16.62 |
| CDX82503 | Canola | nucleus | 14.5 | 16.12 |
| CDY39081 | Canola | nucleus | 15.72 | 16.08 |
| CDY33407 | Canola | nucleus | 15.72 | 16.0 |
| CDX75742 | Canola | nucleus | 14.0 | 15.62 |
| CDX97531 | Canola | nucleus | 14.74 | 15.46 |
| CDY55209 | Canola | nucleus | 14.74 | 15.38 |
| CDY66284 | Canola | nucleus | 20.15 | 15.24 |
| CDY21475 | Canola | nucleus | 18.18 | 14.89 |
| CDY27382 | Canola | nucleus | 15.23 | 13.96 |
| CDY37044 | Canola | nucleus | 14.99 | 13.96 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078DUP0 | EnsemblPlants:CDX92617 | ProteinID:CDX92617 | ProteinID:CDX92617.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00154418001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF2 | SMART:SM00951 | UniParc:UPI0004EE1024 | InterPro:WRC_dom | SEG:seg |
Description
BnaC07g38750D
Coordinates
chrLK031873:+:17969..19741
Molecular Weight (calculated)
44704.7 Da
IEP (calculated)
7.011
GRAVY (calculated)
-0.666
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTRAERNKE DFVGGFGFGV VEHSHKDVML PSHHYHSYSS PSSASFCYCS NGAADPIFSA SNTSSLGEMF SLEGSNASAA VSVADPFFTL TSSAFSEAQW
101: HELERQRNIF KYMMASLPVP SELLLPFSKN SSHTNNQDVT VARGGSLQLG IASNASNSTA DMEPWRCKRT DGKKWRCSRN AVPDQKYCER HAHKSRPRSR
201: KHVETSPHSH HSETRTTKNV ASQFATPYPQ FYGPPLSQFS AVSTLPPGSS SYDHHPNSGL RWLMKEGDSI ATLNPEIHES AQLKVGSSRE LKRGFEYDLN
301: YIQNEPLVDQ RFGALEGLLS PNRQETRRFL VEGEQDEAMG SSLTLSMAGG MEEGEGRSQH QWISHEGPSW LCSTTPGGPL AEALCLGVPN NPSTSTTTTS
401: SCSRSSS
101: HELERQRNIF KYMMASLPVP SELLLPFSKN SSHTNNQDVT VARGGSLQLG IASNASNSTA DMEPWRCKRT DGKKWRCSRN AVPDQKYCER HAHKSRPRSR
201: KHVETSPHSH HSETRTTKNV ASQFATPYPQ FYGPPLSQFS AVSTLPPGSS SYDHHPNSGL RWLMKEGDSI ATLNPEIHES AQLKVGSSRE LKRGFEYDLN
301: YIQNEPLVDQ RFGALEGLLS PNRQETRRFL VEGEQDEAMG SSLTLSMAGG MEEGEGRSQH QWISHEGPSW LCSTTPGGPL AEALCLGVPN NPSTSTTTTS
401: SCSRSSS
001: MGTRAERKED FVGGFGFGVV ENSHKDVMVL PHHHYYPSYS SPSSSSLCYC SAGVSDPMFS VSSNQAYTSS HSGMFTPAGS GSAAVTVADP FFSLSSSGEM
101: RRSMNEDAGA AFSEAQWHEL ERQRNIYKYM MASVPVPPEL LTPFPKNHQS NTNPDVTVAV ATGGSLQLGI ASSASNNTAD LEPWRCKRTD GKKWRCSRNV
201: IPDQKYCERH THKSRPRSRK HVESSHQSSH HNDIRTAKND TSQLVRTYPQ FYGQPISQIP VLSTLPSASS PYDHHRGLRW FTKEDDAIGT LNPETQEAVQ
301: LKVGSSRELK RGFDYDLNFR QKEPIVDQSF GALQGLLSLN QTPQHNQETR QFVVEGKQDE AMGSSLTLSM AGGGMEETEG TNQHQWVSHE GPSWLYSTTP
401: GGPLAEALCL GVSNNPSSST TTSSCSRSSS
101: RRSMNEDAGA AFSEAQWHEL ERQRNIYKYM MASVPVPPEL LTPFPKNHQS NTNPDVTVAV ATGGSLQLGI ASSASNNTAD LEPWRCKRTD GKKWRCSRNV
201: IPDQKYCERH THKSRPRSRK HVESSHQSSH HNDIRTAKND TSQLVRTYPQ FYGQPISQIP VLSTLPSASS PYDHHRGLRW FTKEDDAIGT LNPETQEAVQ
301: LKVGSSRELK RGFDYDLNFR QKEPIVDQSF GALQGLLSLN QTPQHNQETR QFVVEGKQDE AMGSSLTLSM AGGGMEETEG TNQHQWVSHE GPSWLYSTTP
401: GGPLAEALCL GVSNNPSSST TTSSCSRSSS
Arabidopsis Description
GRF8Growth-regulating factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.