Factsheet for Solyc08g083230.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031893	Potato	nucleus	84.67	79.86
VIT_02s0025g02680.t01	Wine grape	nucleus	19.85	44.13
CDY72447	Canola	nucleus, plastid	26.13	30.23
CDY03485	Canola	nucleus	26.38	30.17
Solyc08g068760.1.1	Tomato	cytosol	11.56	29.68
Bra019244.1-P	Field mustard	nucleus	27.89	29.6
CDY10989	Canola	nucleus	27.89	29.52
Bra013767.1-P	Field mustard	nucleus	26.63	28.57
CDX92617	Canola	nucleus	28.39	27.76
Solyc08g079800.2.1	Tomato	nucleus	13.57	24.77
AT4G24150.1	Thale cress	nucleus	27.64	22.31
Solyc09g009200.1.1	Tomato	nucleus	19.85	20.73
Solyc08g005430.2.1	Tomato	nucleus	17.84	19.94
Solyc10g083510.1.1	Tomato	nucleus	19.35	19.79
Solyc07g041640.2.1	Tomato	nucleus	16.33	18.9
Solyc08g075950.1.1	Tomato	nucleus	17.09	18.84
Solyc03g082430.1.1	Tomato	nucleus	20.85	18.12
Solyc12g096070.1.1	Tomato	nucleus	15.33	17.68
Solyc04g077510.2.1	Tomato	nucleus	24.12	16.13
Solyc01g091540.1.1	Tomato	nucleus	16.58	15.71
Solyc02g092070.2.1	Tomato	nucleus	22.36	15.67

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K4CPW7	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF2	SMART:SM00951	EnsemblPlantsGene:Solyc08g083230.1
EnsemblPlants:Solyc08g083230.1.1	UniParc:UPI000276ACED	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:65753957..65755404

Molecular Weight (calculated)

43710.0 Da

IEP (calculated)

7.829

GRAVY (calculated)

-0.743

Length

398 amino acids

Sequence
(BLAST)

001: MEKGENTELL DLKMKTSEVS YPNKRTMFMA PSSHPYFLKE TADDGGSGGS GPEKYVGSDV VSSGASNTCA RKVPFTASQL QEFQRQFIIC KYIMASMPVP
101: PHLLLPLPSP PQSNMDLKFS SGSDPEPWRC KRTDGKKWRC SRDVAPDQKY CERHAHKSKP RSRKPVEIHT NPSPKSNNRH SFQFPTVQPS NDQTRCIEWL
201: GRGDTCGTIP VDDNCNKQLM QSIGFNTRNS PAFQVQHEPK LYPMNFNQYM CNSSSDQALA SQLKNEHCNN SIIASLQGRG TTSNAWPKDG ISSNGSFTSL
301: TLSMSGWNGG MDDDNKHAQA GIRMLDSERS GDEVLRSQWL NPVSWMSSTA PGGPLGEALC LGNASSLRSP HGYSNSSATS SCSFDSCENG SHGLDFIG

Best Arabidopsis Sequence Match ( AT4G24150.2 )
(BLAST)

001: MRMLLGIPYV DKSVLSNSVL ERGKQDKSKL LLVDKCHYEL DVEERKEDFV GGFGFGVVEN SHKDVMVLPH HHYYPSYSSP SSSSLCYCSA GVSDPMFSVS
101: SNQAYTSSHS GMFTPAGSGS AAVTVADPFF SLSSSGEMRR SMNEDAGAAF SEAQWHELER QRNIYKYMMA SVPVPPELLT PFPKNHQSNT NPDVTVAVAT
201: GGSLQLGIAS SASNNTADLE PWRCKRTDGK KWRCSRNVIP DQKYCERHTH KSRPRSRKHV ESSHQSSHHN DIRTAKNDTS QLVRTYPQFY GQPISQIPVL
301: STLPSASSPY DHHRGLRWFT KEDDAIGTLN PETQEAVQLK VGSSRELKRG FDYDLNFRQK EPIVDQSFGA LQGLLSLNQT PQHNQETRQF VVEGKQDEAM
401: GSSLTLSMAG GGMEETEGTN QHQWVSHEGP SWLYSTTPGG PLAEALCLGV SNNPSSSTTT SSCSRSSS

Arabidopsis Description

GRF8Growth-regulating factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.