Factsheet for Solyc08g005430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047580	Potato	nucleus	94.94	95.75
Solyc08g075950.1.1	Tomato	nucleus	74.72	73.68
Solyc12g096070.1.1	Tomato	nucleus	68.26	70.43
VIT_16s0039g01450.t01	Wine grape	nucleus	51.97	58.18
KRH27682	Soybean	nucleus	47.47	54.87
KRH77798	Soybean	nucleus	48.03	53.77
GSMUA_Achr10P...	Banana	nucleus	49.44	52.23
KRH23984	Soybean	nucleus	48.6	51.95
KRH29333	Soybean	nucleus	49.44	51.61
GSMUA_Achr1P23840_001	Banana	nucleus	47.47	47.08
GSMUA_Achr2P04650_001	Banana	extracellular	51.97	42.92
GSMUA_AchrUn_...	Banana	nucleus	46.07	39.9
Solyc07g041640.2.1	Tomato	nucleus	36.52	37.79
Solyc08g068760.1.1	Tomato	cytosol	14.61	33.55
Solyc08g079800.2.1	Tomato	nucleus	17.13	27.98
Solyc09g009200.1.1	Tomato	nucleus	23.31	21.78
Solyc01g091540.1.1	Tomato	nucleus	25.56	21.67
Solyc10g083510.1.1	Tomato	nucleus	23.31	21.34
Solyc04g077510.2.1	Tomato	nucleus	33.71	20.17
Solyc02g092070.2.1	Tomato	nucleus	29.78	18.66
Solyc03g082430.1.1	Tomato	nucleus	23.03	17.9
Solyc08g083230.1.1	Tomato	nucleus	19.94	17.84

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K4CI34	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF8	SMART:SM00951	EnsemblPlantsGene:Solyc08g005430.2
EnsemblPlants:Solyc08g005430.2.1	UniParc:UPI000276B860	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:317215..320529

Molecular Weight (calculated)

39118.2 Da

IEP (calculated)

8.547

GRAVY (calculated)

-0.751

Length

356 amino acids

Sequence
(BLAST)

001: MSGTSTTSVV GVGLVGGGGE VGYNDYGFRP PFTAVQWQEL EHQAMIYKYL VAGLPVPPDL VVPIRRSFDA ISARFFSHPS LGYCSYYGKK FDPEPGRCRR
101: TDGKKWRCSK DAHPDSKYCE RHMHRGRNRS RKPVESQTTS QSLSTSKSHT ATGSSNRSGS FQSNSSGSFQ NMPLYSVANS DGISYGSTTT KLQMEPASYG
201: ITNKEYRYGM APDVDDHNFM PVASTSVRGL GGTGSNTDNM WRLMPSQDHS KANLKNDSQL LGSLPNPFEP VIESKQQPQH CFFSSDIDSP STVKQEPQHP
301: MRSFFDEWPT SKESWSNLDE GSGKNNFSTT QLSISIPNIS SGFSSRSASS PKCADA

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.