Factsheet for Solyc08g079800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009997	Potato	nucleus	49.54	88.52
GSMUA_Achr5P20170_001	Banana	extracellular	26.15	33.33
VIT_02s0025g04910.t01	Wine grape	nucleus	29.36	30.62
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	27.06	28.78
GSMUA_Achr8P12060_001	Banana	extracellular	26.15	28.22
TraesCS6B01G267500.1	Wheat	nucleus	26.15	27.01
TraesCS6A01G257600.1	Wheat	nucleus	26.15	26.89
Os02t0678800-01	Rice	nucleus	25.23	26.07
Zm00001d051456_P001	Maize	nucleus	26.15	25.79
TraesCS6D01G238900.1	Wheat	nucleus	25.23	25.58
Solyc08g068760.1.1	Tomato	cytosol	17.89	25.16
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	25.69	25.0
TraesCS2A01G398300.2	Wheat	nucleus	25.69	24.89
HORVU6Hr1G065740.4	Barley	nucleus	24.31	24.88
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	26.61	24.58
TraesCS2D01G395900.1	Wheat	nucleus	25.69	24.45
TraesCS2B01G416300.1	Wheat	nucleus	25.23	24.23
HORVU2Hr1G094470.2	Barley	nucleus	26.15	22.53
Solyc07g041640.2.1	Tomato	nucleus	28.44	18.02
Solyc08g005430.2.1	Tomato	nucleus	27.98	17.13
Solyc12g096070.1.1	Tomato	nucleus	27.06	17.1
Solyc09g009200.1.1	Tomato	nucleus	29.36	16.8
Solyc08g075950.1.1	Tomato	nucleus	27.52	16.62
Solyc10g083510.1.1	Tomato	nucleus	28.9	16.2
Solyc01g091540.1.1	Tomato	nucleus	28.44	14.76
Solyc08g083230.1.1	Tomato	nucleus	24.77	13.57
Solyc03g082430.1.1	Tomato	nucleus	25.23	12.01
Solyc04g077510.2.1	Tomato	nucleus	29.36	10.76
Solyc02g092070.2.1	Tomato	nucleus	27.52	10.56

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K4CNY0	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF3	SMART:SM00951	EnsemblPlantsGene:Solyc08g079800.2
EnsemblPlants:Solyc08g079800.2.1	UniParc:UPI000276B504	InterPro:WRC_dom	:	:	:

Description

No Description!

Coordinates

chr8:-:63262023..63264299

Molecular Weight (calculated)

24787.0 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.524

Length

218 amino acids

Sequence
(BLAST)

001: MELKISPPKS IATKKVCYNV SDGGEKCSIE LGFKNLELSY SNFSTNGYGF TFLQRQELEQ QFIIYKYIEA GLPVPTHLII PIYKSFTCSL KGLHDVMGYG
101: HVCWEHKSRM EPEPGRCKRT DGKKWRCSKG VVQNQKYCEK HMHRGRQRSR KCMELTNSTD ICCSDSSKIL SQSCQILQKC ATGKVSDMQP LIFLKSLNNI
201: DHNSEPDTTT LSIGLPMN

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.