Factsheet for TraesCS6D01G238900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G267500.1	Wheat	nucleus	94.42	96.21
TraesCS6A01G257600.1	Wheat	nucleus	93.95	95.28
HORVU6Hr1G065740.4	Barley	nucleus	76.28	77.0
Os02t0678800-01	Rice	nucleus	74.42	75.83
Zm00001d051456_P001	Maize	nucleus	73.02	71.04
TraesCS2D01G395900.1	Wheat	nucleus	66.05	62.01
GSMUA_Achr5P20170_001	Banana	extracellular	48.84	61.4
GSMUA_Achr8P12060_001	Banana	extracellular	50.23	53.47
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	49.3	51.71
VIT_02s0025g04910.t01	Wine grape	nucleus	34.42	35.41
PGSC0003DMT400009997	Potato	nucleus	16.28	28.69
Solyc08g079800.2.1	Tomato	nucleus	25.58	25.23
TraesCS2D01G246600.1	Wheat	nucleus	30.7	25.0
TraesCS7D01G166400.1	Wheat	nucleus	29.3	19.69
TraesCS2D01G435200.1	Wheat	nucleus, plastid	34.42	18.93
TraesCS7D01G044200.1	Wheat	nucleus	31.63	18.48
TraesCS6D01G245300.1	Wheat	plastid	33.02	17.36
TraesCS4D01G020300.1	Wheat	nucleus	30.23	15.66
TraesCS6D01G315700.1	Wheat	nucleus	29.3	15.22
TraesCS6D01G163900.1	Wheat	plastid	17.21	14.98
TraesCS4D01G059600.1	Wheat	nucleus	37.21	13.84

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF3	SMART:SM00951	EnsemblPlantsGene:TraesCS6D01G238900	EnsemblPlants:TraesCS6D01G238900.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:339389420..339390265

Molecular Weight (calculated)

22752.0 Da

IEP (calculated)

10.397

GRAVY (calculated)

-0.360

Length

215 amino acids

Sequence
(BLAST)

001: MADEKEADSL QPPSKQPRLS SADSNAGAVT MAVSSPLGLG LGLGLGGDSR GEQQAFQARA AAAAAKSALT FMQQQELEHQ VLIYRYFAAG APVPVNLVLP
101: IWKSIAASSF GPHRFPSLIG LGSLCFDYRS SMEPEPGRCR RTDGKKWRCS RDVLQGHKYC ERHVHRGRGR SRKPVEGAPA APAHSGSSTT APPRAIGFSP
201: AGILHATHSA AARAT

Best Arabidopsis Sequence Match ( AT3G52910.1 )
(BLAST)

001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH

Arabidopsis Description

GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.