Factsheet for TraesCS4D01G020300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G250600.1
TraesCS4B01G064000.1
TraesCS4D01G062900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	TraesCS4A01G250600.1	AT5G28640.1	15326298
AT2G22840.1	TraesCS4B01G064000.1	AT5G28640.1	15326298
AT2G22840.1	TraesCS4D01G062900.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4A01G250600.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4B01G064000.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4D01G062900.1	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G291500.1	Wheat	nucleus	95.42	97.06
HORVU4Hr1G003440.12	Barley	nucleus	89.16	90.69
Os03t0674700-01	Rice	nucleus	70.84	69.01
EER93679	Sorghum	nucleus	66.27	63.22
Zm00001d013555_P001	Maize	nucleus	62.89	59.86
Zm00001d033396_P003	Maize	nucleus	63.13	59.82
CDY55116	Canola	nucleus	21.93	32.27
TraesCS6D01G238900.1	Wheat	nucleus	15.66	30.23
CDY66422	Canola	nucleus	22.65	30.03
TraesCS2D01G395900.1	Wheat	nucleus	15.18	27.51
CDY29584	Canola	nucleus	24.82	25.25
CDX83200	Canola	nucleus	22.89	24.11
CDX72654	Canola	nucleus	25.54	23.98
CDX69322	Canola	nucleus	26.51	23.86
CDX75672	Canola	nucleus	25.78	23.73
Bra011781.1-P	Field mustard	nucleus	25.78	23.73
Bra017851.1-P	Field mustard	nucleus	25.54	23.71
TraesCS7D01G044200.1	Wheat	nucleus	20.48	23.1
TraesCS7D01G166400.1	Wheat	nucleus	17.11	22.19
VIT_18s0001g08650.t01	Wine grape	nucleus	31.57	21.69
AT2G22840.1	Thale cress	nucleus	26.27	20.57
Bra000575.1-P	Field mustard	nucleus	25.54	20.46
Solyc04g077510.2.1	Tomato	nucleus	29.16	20.34
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	29.16	20.27
TraesCS2D01G435200.1	Wheat	nucleus, plastid	19.04	20.2
TraesCS2D01G246600.1	Wheat	nucleus	12.77	20.08
KRG88739	Soybean	nucleus	28.43	19.87
TraesCS6D01G163900.1	Wheat	plastid	11.81	19.84
AT4G37740.1	Thale cress	nucleus	25.54	19.81
KRH05542	Soybean	nucleus	27.95	19.33
KRH05543	Soybean	nucleus	27.95	19.05
KRG88736	Soybean	nucleus	27.47	19.03
TraesCS4D01G059600.1	Wheat	nucleus	26.51	19.03
TraesCS6D01G245300.1	Wheat	plastid	18.55	18.83
TraesCS6D01G315700.1	Wheat	nucleus	18.55	18.6
CDY21475	Canola	nucleus	21.45	17.91

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF18	SMART:SM00951	EnsemblPlantsGene:TraesCS4D01G020300	EnsemblPlants:TraesCS4D01G020300.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:8777205..8779670

Molecular Weight (calculated)

45774.6 Da

IEP (calculated)

8.752

GRAVY (calculated)

-0.794

Length

415 amino acids

Sequence
(BLAST)

001: MLPELTAAAM ELGQVXXYTP PATKDARSGG GFAQAAACPY PYPSPFLDEQ KMLSFSKAAA PPSSGMDFGR SNEQRLLLAR SKMPFTPSQW MELEHQALIY
101: KYLNAKAPIP SSLLISISKS FRPSSDRMPW RPVYQGFTNA DSDPEPGRCR RTDGKKWRCS KEAMAEHKYC ERHINRNRHR SRKPVENQTR KNAKETPAAG
201: SLSAAVSQGG CKKAKAGDEL KPGSVSYWTD NLNRAMVSKA RGNNPEEGNS APLLNSTNQQ HTLSLFSQLK QQSKPDKFSP AVDSESISSN TVLKPWERSN
301: QQSSKDVSST TLHDRGCLQS VLQDFSMHKN DKIEAQKNNA SVPSTFYSPT EGQHISCLAS NMMQVQEDCI SSSWEIPQGG PLGEILTNSK NTDDLTNKCE
401: SRSYGWLLSL DEHEM

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.