Factsheet for TraesCS6D01G245300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G269600.1	Wheat	nucleus	93.4	93.63
TraesCS6B01G296900.1	Wheat	plastid	92.91	93.6
HORVU6Hr1G068370.1	Barley	nucleus	77.02	80.77
HORVU0Hr1G016610.1	Barley	plastid	70.42	69.06
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	34.72	66.98
EES12787	Sorghum	nucleus	57.21	61.9
Zm00001d002429_P003	Maize	nucleus	54.28	61.84
Zm00001d026240_P006	Maize	plastid	56.97	58.69
TraesCS2D01G435200.1	Wheat	nucleus, plastid	55.26	57.8
TraesCS7D01G044200.1	Wheat	nucleus	33.5	37.23
TraesCS6D01G238900.1	Wheat	nucleus	17.36	33.02
TraesCS7D01G166400.1	Wheat	nucleus	24.21	30.94
TraesCS2D01G395900.1	Wheat	nucleus	16.63	29.69
TraesCS6D01G315700.1	Wheat	nucleus	28.12	27.78
TraesCS2D01G246600.1	Wheat	nucleus	14.91	23.11
TraesCS6D01G163900.1	Wheat	plastid	11.98	19.84
TraesCS4D01G020300.1	Wheat	nucleus	18.83	18.55
TraesCS4D01G059600.1	Wheat	nucleus	25.67	18.17

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF21	SMART:SM00951	EnsemblPlantsGene:TraesCS6D01G245300	EnsemblPlants:TraesCS6D01G245300.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:347433395..347436672

Molecular Weight (calculated)

43622.8 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.559

Length

409 amino acids

Sequence
(BLAST)

001: MAMPYASLSP AGDRRSSPAA TASLLPFCRS SPFSAGGGNG GMGEEARMDG RWMARPVPFT AAQYEELEHQ ALIYKYLVAG VPVPPDLVLP IRRGIESLAA
101: RFYHNPLAIG YGSYLGKKVD PEPGRCRRTD GKKWRCAKEA ASDSKYCERH MHRGRNRSRK PVETQLVPHT QPPAASAVPP LATGFHSHSL YPAIGGSTNG
201: GGGGGNNGMS MPSTFSSALG PPQQHMGSNA ASPYAALGGA GTCKDFRYTA YGIRSLADEH SQLMTEAMNT SVENPWRLPP SSQTTSFPLS SYAPQLGATS
301: DLGQNNNHNN SSSNSAVKSE RQQPLSFPGC GDFGGGGMDS AKQENQTLRP FFDEWPKTRD SWSDLTDDNS SLASFSATQL SISIPMTSSD FSAASSQSPN
401: GMLFAGEMY

Best Arabidopsis Sequence Match ( AT2G06200.2 )
(BLAST)

001: MDTLSIKTYL LLSYTFNFPI QIPIFNLSFF FISLSLSLFM ATRIPFTESQ WEELENQALV FKYLAANMPV PPHLLFLIKR PFLFSSSSSS SSSSSFFSPT
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI

Arabidopsis Description

AtGRF6growth-regulating factor 6 [Source:TAIR;Acc:AT2G06200]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.