Factsheet for Zm00001d026240_P006

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12787	Sorghum	nucleus	85.39	89.68
Zm00001d002429_P003	Maize	nucleus	80.86	89.42
Zm00001d005387_P001	Maize	nucleus	9.82	62.9
TraesCS6B01G296900.1	Wheat	plastid	59.19	57.88
TraesCS6D01G245300.1	Wheat	plastid	58.69	56.97
TraesCS6A01G269600.1	Wheat	nucleus	58.19	56.62
Zm00001d042010_P001	Maize	nucleus	9.82	56.52
Zm00001d017742_P001	Maize	plastid	57.43	55.88
HORVU6Hr1G068370.1	Barley	nucleus	52.9	53.85
HORVU0Hr1G016610.1	Barley	plastid	49.62	47.24
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	24.69	46.23
Zm00001d014421_P001	Maize	cytosol	10.83	43.88
Zm00001d045533_P001	Maize	nucleus	37.78	40.98
Zm00001d035965_P004	Maize	nucleus	38.79	40.42
Zm00001d051456_P001	Maize	nucleus	17.63	31.67
Zm00001d018260_P001	Maize	mitochondrion	29.22	30.85
Zm00001d037117_P001	Maize	mitochondrion, nucleus	28.46	30.71
Zm00001d000238_P001	Maize	nucleus	29.72	30.1
Zm00001d052112_P001	Maize	mitochondrion, nucleus	30.23	29.93
Zm00001d006338_P002	Maize	mitochondrion	17.38	24.82
Zm00001d007465_P001	Maize	nucleus	18.89	24.04
Zm00001d006348_P001	Maize	nucleus	15.87	23.08
Zm00001d021362_P001	Maize	extracellular, nucleus	15.37	22.68
Zm00001d033396_P003	Maize	nucleus	21.16	19.18
Zm00001d013555_P001	Maize	nucleus	19.9	18.12
Zm00001d033876_P004	Maize	nucleus	26.45	17.71
Zm00001d013346_P001	Maize	nucleus	25.44	17.27
Zm00001d002049_P001	Maize	cytosol, plastid	3.27	13.27

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A1D6JDJ6	ProteinID:AQK45894.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF21	SMART:SM00951
UniParc:UPI000844F438	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d026240	EnsemblPlants:Zm00001d026240_P006	EnsemblPlants:Zm00001d026240_T006	SEG:seg

Description

GRF-transcription factor 5Growth-regulating factor

Coordinates

chr10:-:141714630..141718409

Molecular Weight (calculated)

42670.3 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.436

Length

397 amino acids

Sequence
(BLAST)

001: MGMAMPFASP SPAADHRPSS LLPFCRAAPL SAAGEDAAQQ HAMSGRWAAR PALFTAAQYE ELEHQALIYK YLVAGVPVPP DLLLPLRRGF VFHQPPALGY
101: GPYFGKKVDP EPGRCRRTDG KKWRCSKEAA PDSKYCERHM HRGRNRSRKP VEAQLAPPPH AQPQQQQQAP APAAGFQNHS LYPSILTGNG GGGVGAGAGG
201: GTFGLGPTSQ LHMDSAAAYA TAAGGGSKYL RYSAYGVKSL SDEHSTLLSG GMDPSMMDNS WRLLPSQTNT FQATSYPVFG TLSGLDESTI ASLPKTQREP
301: LSFFGSDFVT AAKQENQTLR PFFDEWPKSR DSWPELGEDS SLGFSATQLS ISIPMATSDF SNTSSRSPGG IPSRFLNLAR PPIIADERVP CMWIPAS

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.