Factsheet for Zm00001d007465_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033905_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Zm00001d033905_P001	AT5G28640.1	15326298
AT4G37740.1	Zm00001d033905_P001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28671	Sorghum	nucleus	91.35	76.82
HORVU4Hr1G037480.5	Barley	nucleus	57.05	54.27
Zm00001d005387_P001	Maize	nucleus	8.97	45.16
Zm00001d042010_P001	Maize	nucleus	9.29	42.03
CDY55116	Canola	nucleus	32.69	36.17
CDY66422	Canola	nucleus	32.69	32.59
Zm00001d014421_P001	Maize	cytosol	9.94	31.63
GSMUA_Achr3P15140_001	Banana	nucleus	49.04	31.35
CDX83200	Canola	nucleus	37.82	29.95
Zm00001d051456_P001	Maize	nucleus	19.87	28.05
GSMUA_Achr1P27000_001	Banana	nucleus	37.5	27.59
GSMUA_AchrUn_...	Banana	nucleus	29.81	27.27
Zm00001d006338_P002	Maize	mitochondrion	23.08	25.9
CDX72654	Canola	nucleus	36.22	25.57
CDY29584	Canola	nucleus	32.69	25.0
Zm00001d033876_P004	Maize	nucleus	47.12	24.79
GSMUA_Achr8P04970_001	Banana	nucleus	46.15	24.78
Bra017851.1-P	Field mustard	nucleus	35.26	24.61
Zm00001d013346_P001	Maize	nucleus	45.83	24.44
Bra011781.1-P	Field mustard	nucleus	35.26	24.39
CDX75672	Canola	nucleus	34.94	24.17
GSMUA_Achr7P27480_001	Banana	nucleus	46.47	23.89
CDX69322	Canola	nucleus	34.62	23.43
AT2G22840.1	Thale cress	nucleus	39.1	23.02
Bra000575.1-P	Field mustard	nucleus	37.82	22.78
AT4G37740.1	Thale cress	nucleus	38.46	22.43
Zm00001d002429_P003	Maize	nucleus	23.08	20.06
Zm00001d033396_P003	Maize	nucleus	26.92	19.18
Zm00001d037117_P001	Maize	mitochondrion, nucleus	22.44	19.02
Zm00001d026240_P006	Maize	plastid	24.04	18.89
Zm00001d017742_P001	Maize	plastid	24.68	18.87
Zm00001d000238_P001	Maize	nucleus	23.4	18.62
Zm00001d018260_P001	Maize	mitochondrion	22.12	18.35
Zm00001d013555_P001	Maize	nucleus	25.64	18.35
Zm00001d006348_P001	Maize	nucleus	15.71	17.95
Zm00001d021362_P001	Maize	extracellular, nucleus	15.38	17.84
Zm00001d052112_P001	Maize	mitochondrion, nucleus	22.76	17.71
CDY21475	Canola	nucleus	27.88	17.5
Zm00001d035965_P004	Maize	nucleus	21.15	17.32
Zm00001d045533_P001	Maize	nucleus	20.19	17.21
Zm00001d002049_P001	Maize	cytosol, plastid	4.49	14.29
GSMUA_Achr8P26530_001	Banana	nucleus	50.32	10.95

Protein Annotations

MapMan:15.5.52.1	EMBL:BT061281	UniProt:C0HG25	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	ProteinID:ONM26920.1
ProteinID:ONM26921.1	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF6	SMART:SM00951	UniParc:UPI00019485B4	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d007465	EnsemblPlants:Zm00001d007465_P001
EnsemblPlants:Zm00001d007465_T001	SEG:seg	:	:	:	:

Description

GRF-transcription factor 15Growth-regulating factor 2

Coordinates

chr2:-:232275513..232278071

Molecular Weight (calculated)

34095.8 Da

IEP (calculated)

9.521

GRAVY (calculated)

-0.615

Length

312 amino acids

Sequence
(BLAST)

001: MQGVLSRVRR PFTPTQWMEL EHQALIYKHF AVNAPVPSSL LLPIKRSLNP WSSLGSSSLG WAPFRSGSAD AEPGRCRRTD GKKWRCSRDA VGDQKYCERH
101: IKRGCHRSRK HVEGRKATPT TADPTMAVSG GSLLHSHAVA WQQQGKSSAA NVTDPFSLGS NRNLLDKQNL GDQFSVSTSM DSFDFSSSHS SPNQAKVAFS
201: PVAMQHEHDQ LYLVHGAGSS AENVNKSQDG QLLVSRETID DGPLGEVFKG KSCQSASADI LTDHWTSTRD LRPPTGVLQM SSSNTVPAEN HTSNSSYLMA
301: RMANSQTVPT LH

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.