Factsheet for Zm00001d035965_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89089	Sorghum	cytosol, mitochondrion, nucleus	71.92	85.89
Zm00001d045533_P001	Maize	nucleus	79.53	82.79
TraesCS7D01G044200.1	Wheat	nucleus	70.08	72.55
TraesCS7A01G049100.1	Wheat	nucleus	70.08	72.16
TraesCS4A01G434900.1	Wheat	nucleus	69.55	71.43
HORVU7Hr1G008680.11	Barley	cytosol, mitochondrion, nucleus, vacuole	69.55	66.42
Zm00001d005387_P001	Maize	nucleus	9.97	61.29
Zm00001d042010_P001	Maize	nucleus	10.24	56.52
Zm00001d014421_P001	Maize	cytosol	11.02	42.86
Zm00001d002429_P003	Maize	nucleus	39.63	42.06
Zm00001d026240_P006	Maize	plastid	40.42	38.79
Zm00001d017742_P001	Maize	plastid	37.53	35.05
Zm00001d037117_P001	Maize	mitochondrion, nucleus	29.4	30.43
Zm00001d018260_P001	Maize	mitochondrion	28.61	28.99
Zm00001d051456_P001	Maize	nucleus	16.8	28.96
Zm00001d000238_P001	Maize	nucleus	29.4	28.57
Zm00001d052112_P001	Maize	mitochondrion, nucleus	29.92	28.43
Zm00001d006348_P001	Maize	nucleus	15.75	21.98
Zm00001d006338_P002	Maize	mitochondrion	16.01	21.94
Zm00001d021362_P001	Maize	extracellular, nucleus	15.22	21.56
Zm00001d007465_P001	Maize	nucleus	17.32	21.15
Zm00001d033396_P003	Maize	nucleus	23.88	20.78
Zm00001d013555_P001	Maize	nucleus	22.31	19.5
Zm00001d013346_P001	Maize	nucleus	26.51	17.27
Zm00001d033876_P004	Maize	nucleus	26.51	17.03
Zm00001d002049_P001	Maize	cytosol, plastid	1.84	7.14

Protein Annotations

EntrezGene:100125644	MapMan:15.5.52.1	UniProt:A0A1D6LJZ1	ProteinID:AQK80034.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF7
SMART:SM00951	UniParc:UPI0008454C66	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d035965	EnsemblPlants:Zm00001d035965_P004	EnsemblPlants:Zm00001d035965_T004
SEG:seg	:	:	:	:	:

Description

GRF-transcription factor 7Growth-regulating factor 6

Coordinates

chr6:-:62968987..62972013

Molecular Weight (calculated)

40674.3 Da

IEP (calculated)

9.359

GRAVY (calculated)

-0.630

Length

381 amino acids

Sequence
(BLAST)

001: MLSSASSAAG AAMGMGGGGY AHQPPPQRTV FTAAQWAELE QQALIYKYLM AGVPVPPDLL LPVRPGPAAA FSFAGPAAAS PFYHQHHPSL SYYAYYGKKL
101: DPEPWRCRRT DGKKWRCSKE AHPDSKYCER HMHRGRNRSR KPVESKTASS SSPAHPSPPQ LSTVTTTAPL EPLAAAGGKV HGLSLGGGAA GSSHLGVDAS
201: NAHYRYGSKY PLGAKPDGGE LSFFSGASSG NNSRGGFTID SPSDNNSWHS ALASSVPPFT LSTKSGDSGL LPGAYASYSQ SHSHMEPPRE LGQVTIASLA
301: QEQERQQPFS GGMLGNVKQE NQNQPLRPFF DEWPGTRADS WPPEMDGAPR AGRTSFSSST TQLSISIPMP RCELHLRNQN S

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.