Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d033905_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13960.1 | Zm00001d033905_P001 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU76020 | Sorghum | mitochondrion, nucleus | 73.91 | 80.47 |
| Zm00001d000238_P001 | Maize | nucleus | 69.57 | 65.31 |
| Os06t0204800-00 | Rice | nucleus | 49.73 | 60.8 |
| TraesCS7A01G165600.1 | Wheat | nucleus | 46.74 | 55.66 |
| TraesCS7B01G070200.1 | Wheat | nucleus | 47.28 | 55.06 |
| HORVU7Hr1G034610.4 | Barley | mitochondrion | 46.47 | 54.63 |
| TraesCS7D01G166400.1 | Wheat | nucleus | 47.01 | 54.06 |
| Zm00001d005387_P001 | Maize | nucleus | 8.15 | 48.39 |
| Zm00001d042010_P001 | Maize | nucleus | 8.7 | 46.38 |
| Zm00001d018260_P001 | Maize | mitochondrion | 39.4 | 38.56 |
| Zm00001d052112_P001 | Maize | mitochondrion, nucleus | 41.3 | 37.91 |
| Zm00001d014421_P001 | Maize | cytosol | 10.05 | 37.76 |
| GSMUA_Achr8P30640_001 | Banana | nucleus | 29.62 | 34.06 |
| GSMUA_Achr7P02330_001 | Banana | nucleus | 29.62 | 31.69 |
| Zm00001d002429_P003 | Maize | nucleus | 30.43 | 31.2 |
| VIT_09s0002g01350.t01 | Wine grape | nucleus | 30.71 | 31.13 |
| Zm00001d045533_P001 | Maize | nucleus | 30.16 | 30.33 |
| VIT_11s0016g01250.t01 | Wine grape | nucleus | 31.79 | 30.23 |
| Solyc07g041640.2.1 | Tomato | nucleus | 27.99 | 29.94 |
| KRH12524 | Soybean | nucleus | 29.62 | 29.86 |
| KRH47599 | Soybean | nucleus | 27.99 | 29.86 |
| KRH37478 | Soybean | nucleus | 29.35 | 29.59 |
| Zm00001d035965_P004 | Maize | nucleus | 30.43 | 29.4 |
| KRH02627 | Soybean | nucleus | 29.62 | 28.91 |
| KRH19281 | Soybean | nucleus | 30.16 | 28.91 |
| GSMUA_Achr1P21940_001 | Banana | nucleus | 29.62 | 28.76 |
| KRH06183 | Soybean | nucleus | 27.99 | 28.61 |
| Zm00001d026240_P006 | Maize | plastid | 30.71 | 28.46 |
| Bra001532.1-P | Field mustard | nucleus | 27.17 | 27.55 |
| CDX71979 | Canola | nucleus | 28.53 | 27.27 |
| CDX82503 | Canola | nucleus | 26.9 | 27.05 |
| Zm00001d017742_P001 | Maize | plastid | 29.62 | 26.72 |
| Zm00001d051456_P001 | Maize | nucleus | 16.03 | 26.7 |
| CDX75742 | Canola | nucleus | 26.36 | 26.58 |
| AT3G13960.1 | Thale cress | nucleus | 28.53 | 26.45 |
| CDY39081 | Canola | nucleus | 28.53 | 26.38 |
| PGSC0003DMT400033847 | Potato | nucleus | 19.02 | 25.93 |
| CDX97531 | Canola | nucleus | 26.9 | 25.52 |
| CDY55209 | Canola | nucleus | 26.9 | 25.38 |
| Bra027384.1-P | Field mustard | nucleus | 26.9 | 25.32 |
| Zm00001d007465_P001 | Maize | nucleus | 19.02 | 22.44 |
| Zm00001d006338_P002 | Maize | mitochondrion | 16.3 | 21.58 |
| Bra021521.1-P | Field mustard | cytosol | 23.91 | 21.41 |
| Zm00001d033396_P003 | Maize | nucleus | 22.28 | 18.72 |
| Zm00001d006348_P001 | Maize | nucleus | 13.86 | 18.68 |
| Zm00001d021362_P001 | Maize | extracellular, nucleus | 13.59 | 18.59 |
| Zm00001d013555_P001 | Maize | nucleus | 21.47 | 18.12 |
| Zm00001d033876_P004 | Maize | nucleus | 25.0 | 15.51 |
| Zm00001d013346_P001 | Maize | nucleus | 24.18 | 15.21 |
| Zm00001d002049_P001 | Maize | cytosol, plastid | 2.45 | 9.18 |
Protein Annotations
| MapMan:15.5.52.1 | UniProt:A0A1D6LUN9 | ProteinID:AQK83041.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0032502 | InterPro:GRF | InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 |
| PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF10 | SMART:SM00951 |
| UniParc:UPI00022076CA | InterPro:WRC_dom | EnsemblPlantsGene:Zm00001d037117 | EnsemblPlants:Zm00001d037117_P001 | EnsemblPlants:Zm00001d037117_T001 | SEG:seg |
Description
GRF-transcription factor 11Growth-regulating factor 6
Coordinates
chr6:+:112965440..112967072
Molecular Weight (calculated)
39446.1 Da
IEP (calculated)
8.884
GRAVY (calculated)
-0.517
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLSGHGGGR RLFTASQWQE LEHQALIFKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP PQPSPSRTTC ALLSSRPDLP RPRLMFHSDH RQPSAHHIIA
101: DDFVRVTVHA VAYWGCYGAG APFGRKAAED TEPGRCRRTD GKKWRCSREA HGDSKYCEKH IHRGKSRSRK PVEVTSSPAA GPAAAYRPSA ISTISPPRAA
201: DAPPPSLAYP QQHLLHGASS AAGAAARVPA GALQLHLDAS LHAAAAAASP SPPPSYHRYA HYTPPASSLF PGGGYGYDYD YGQSKELRRR HFHALGADLS
301: LDKPLPEPDT GSDEKQPLRR FFDEWPRESG DMAADDATQL SISIPAASPS DLAATSASAA AARFHNGE
101: DDFVRVTVHA VAYWGCYGAG APFGRKAAED TEPGRCRRTD GKKWRCSREA HGDSKYCEKH IHRGKSRSRK PVEVTSSPAA GPAAAYRPSA ISTISPPRAA
201: DAPPPSLAYP QQHLLHGASS AAGAAARVPA GALQLHLDAS LHAAAAAASP SPPPSYHRYA HYTPPASSLF PGGGYGYDYD YGQSKELRRR HFHALGADLS
301: LDKPLPEPDT GSDEKQPLRR FFDEWPRESG DMAADDATQL SISIPAASPS DLAATSASAA AARFHNGE
001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
Arabidopsis Description
GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.