CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92707
KRG97010
KRH34114
KRH68767

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	KRG92707	AT5G28640.1	15960617
AT3G13960.1	KRG97010	AT5G28640.1	15960617
AT3G13960.1	KRH34114	AT5G28640.1	15960617
AT3G13960.1	KRH68767	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47599	Soybean	nucleus	93.06	97.1
VIT_11s0016g01250.t01	Wine grape	nucleus	46.39	43.15
KRH37478	Soybean	nucleus	41.94	41.37
KRH12524	Soybean	nucleus	41.67	41.1
KRH19281	Soybean	nucleus	43.33	40.62
KRH02627	Soybean	nucleus	41.67	39.79
GSMUA_Achr8P30640_001	Banana	nucleus	34.72	39.06
PGSC0003DMT400033847	Potato	nucleus	28.33	37.78
Bra001532.1-P	Field mustard	nucleus	37.5	37.19
CDX71979	Canola	nucleus	39.44	36.88
CDY39081	Canola	nucleus	40.56	36.68
KRH23984	Soybean	nucleus	33.89	36.64
CDX82503	Canola	nucleus	37.22	36.61
CDX75742	Canola	nucleus	36.67	36.16
CDY55209	Canola	nucleus	39.17	36.15
CDX97531	Canola	nucleus	38.89	36.08
KRH27682	Soybean	nucleus	30.83	36.04
AT3G13960.1	Thale cress	nucleus	39.72	36.02
Bra027384.1-P	Field mustard	nucleus	38.61	35.55
Os02t0776900-01	Rice	mitochondrion, nucleus	38.89	35.26
KRH77798	Soybean	nucleus	31.11	35.22
KRH29333	Soybean	nucleus	33.06	34.9
Os06t0204800-00	Rice	nucleus	28.61	34.22
KXG31209	Sorghum	mitochondrion, nucleus	36.94	33.59
Zm00001d018260_P001	Maize	mitochondrion	35.0	33.51
TraesCS6A01G335900.1	Wheat	nucleus	37.5	33.01
TraesCS6B01G366700.1	Wheat	nucleus	37.5	32.93
TraesCS6D01G315700.1	Wheat	nucleus	37.78	32.85
GSMUA_Achr1P21940_001	Banana	nucleus	34.17	32.45
HORVU6Hr1G081210.1	Barley	nucleus	36.67	31.96
OQU76020	Sorghum	mitochondrion, nucleus	29.44	31.36
Zm00001d052112_P001	Maize	mitochondrion, nucleus	34.44	30.92
Bra021521.1-P	Field mustard	cytosol	35.0	30.66
GSMUA_Achr7P02330_001	Banana	nucleus	28.89	30.23
HORVU7Hr1G034610.4	Barley	mitochondrion	25.28	29.07
TraesCS7A01G165600.1	Wheat	nucleus	24.17	28.16
Zm00001d037117_P001	Maize	mitochondrion, nucleus	28.61	27.99
TraesCS7B01G070200.1	Wheat	nucleus	24.44	27.85
TraesCS7D01G166400.1	Wheat	nucleus	24.44	27.5
Zm00001d000238_P001	Maize	nucleus	29.17	26.79
KRH39656	Soybean	nucleus, plastid	23.61	25.22
KRH76368	Soybean	nucleus	23.33	25.07
KRH30830	Soybean	nucleus	21.94	23.58
KRH32671	Soybean	nucleus	21.39	22.92
KRH67865	Soybean	nucleus	24.17	22.66
KRG96154	Soybean	nucleus	23.61	21.91
KRH76298	Soybean	nucleus	22.22	17.47
KRH65240	Soybean	nucleus	22.5	17.31
KRH64328	Soybean	nucleus	26.39	16.02
KRH53600	Soybean	nucleus	25.0	15.57
KRH05542	Soybean	nucleus	23.33	14.0
KRG88739	Soybean	nucleus	22.5	13.64
KRH05543	Soybean	nucleus	23.06	13.63
KRG88736	Soybean	nucleus	22.5	13.52

Protein Annotations

EntrezGene:100814760	MapMan:15.5.52.1	EMBL:ACUP02009816	EnsemblPlantsGene:GLYMA_16G007600	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:K7MEH1	EnsemblPlants:KRH06183	ProteinID:KRH06183	ProteinID:KRH06183.1	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF38	SMART:SM00951	UniParc:UPI000294DFFD
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:636326..638020

Molecular Weight (calculated)

40953.0 Da

IEP (calculated)

8.453

GRAVY (calculated)

-1.020

Length

360 amino acids

Sequence
(BLAST)

001: MMSASAGARN RSPFTQIQWQ ELEQQALVFK YMVTGTPIPP DLIYSIKRSL DTSISSRLFP HHPIGWGCFE MGFGRKVDPE PGRCRRTDGK KWRCSKEAYP
101: DSKYCERHMH RGRNRSRKPV EVSSATSTAT NTSQTIPSSY TRNLSLTNNS NPNITPPPPP SSFPFSHLPS SMPIDQSQPF SQSYQNSSLN PFFYSQSTSS
201: RPPDADFPPQ DATTHHLFMD SAGSYSHDEK NYSRHVHGIR EDVDERAFFP EASGSARSYT DSYQQLSMSS YKSYSNSNFQ NINNDATTNP RQQEQQLQQQ
301: QHCFVLGTDF KSTRPSKEKE AETTTGQRPL HRFFGEWPPK NTTTDSWLDL ASNSRIQTDE

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.