CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92707
KRG97010
KRH34114
KRH68767

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	KRG92707	AT5G28640.1	15960617
AT3G13960.1	KRG97010	AT5G28640.1	15960617
AT3G13960.1	KRH34114	AT5G28640.1	15960617
AT3G13960.1	KRH68767	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06183	Soybean	nucleus	97.1	93.06
VIT_11s0016g01250.t01	Wine grape	nucleus	48.12	42.89
KRH37478	Soybean	nucleus	42.9	40.55
KRH12524	Soybean	nucleus	42.61	40.27
KRH19281	Soybean	nucleus	44.64	40.1
GSMUA_Achr8P30640_001	Banana	nucleus	36.52	39.38
KRH02627	Soybean	nucleus	42.9	39.26
Bra001532.1-P	Field mustard	nucleus	39.71	37.74
PGSC0003DMT400033847	Potato	nucleus	29.28	37.41
CDX71979	Canola	nucleus	41.74	37.4
CDY39081	Canola	nucleus	42.9	37.19
CDX82503	Canola	nucleus	39.42	37.16
KRH23984	Soybean	nucleus	35.65	36.94
CDX75742	Canola	nucleus	38.84	36.71
AT3G13960.1	Thale cress	nucleus	42.03	36.52
CDY55209	Canola	nucleus	41.16	36.41
CDX97531	Canola	nucleus	40.87	36.34
KRH27682	Soybean	nucleus	32.17	36.04
Bra027384.1-P	Field mustard	nucleus	40.58	35.81
Os02t0776900-01	Rice	mitochondrion, nucleus	40.58	35.26
KRH77798	Soybean	nucleus	32.46	35.22
KRH29333	Soybean	nucleus	34.78	35.19
Os06t0204800-00	Rice	nucleus	30.43	34.88
KXG31209	Sorghum	mitochondrion, nucleus	38.26	33.33
Zm00001d018260_P001	Maize	mitochondrion	36.23	33.24
TraesCS6A01G335900.1	Wheat	nucleus	38.84	32.76
GSMUA_Achr1P21940_001	Banana	nucleus	35.94	32.72
TraesCS6B01G366700.1	Wheat	nucleus	38.84	32.68
TraesCS6D01G315700.1	Wheat	nucleus	39.13	32.61
OQU76020	Sorghum	mitochondrion, nucleus	31.3	31.95
HORVU6Hr1G081210.1	Barley	nucleus	37.97	31.72
Zm00001d052112_P001	Maize	mitochondrion, nucleus	35.65	30.67
Bra021521.1-P	Field mustard	cytosol	36.52	30.66
GSMUA_Achr7P02330_001	Banana	nucleus	29.86	29.94
HORVU7Hr1G034610.4	Barley	mitochondrion	26.96	29.71
TraesCS7A01G165600.1	Wheat	nucleus	25.8	28.8
TraesCS7B01G070200.1	Wheat	nucleus	26.09	28.48
TraesCS7D01G166400.1	Wheat	nucleus	26.09	28.12
Zm00001d037117_P001	Maize	mitochondrion, nucleus	29.86	27.99
Zm00001d000238_P001	Maize	nucleus	31.01	27.3
KRH39656	Soybean	nucleus, plastid	25.22	25.82
KRH76368	Soybean	nucleus	24.93	25.67
KRH30830	Soybean	nucleus	22.9	23.58
KRH32671	Soybean	nucleus	22.32	22.92
KRH67865	Soybean	nucleus	25.22	22.66
KRG96154	Soybean	nucleus	24.64	21.91
KRH76298	Soybean	nucleus	23.48	17.69
KRH65240	Soybean	nucleus	23.77	17.52
KRH64328	Soybean	nucleus	27.25	15.85
KRH53600	Soybean	nucleus	25.8	15.4
KRH05542	Soybean	nucleus	24.06	13.83
KRH05543	Soybean	nucleus	24.06	13.63
KRG88739	Soybean	nucleus	23.19	13.47
KRG88736	Soybean	nucleus	23.19	13.36

Protein Annotations

EntrezGene:100806024	MapMan:15.5.52.1	EMBL:ACUP02004155	EnsemblPlantsGene:GLYMA_07G038400	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	UniProt:I1KHB3	InterPro:IPR014977
InterPro:IPR014978	EnsemblPlants:KRH47599	ProteinID:KRH47599	ProteinID:KRH47599.1	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF38	SMART:SM00951	UniParc:UPI0002338394
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:3169310..3172002

Molecular Weight (calculated)

39465.4 Da

IEP (calculated)

8.451

GRAVY (calculated)

-1.009

Length

345 amino acids

Sequence
(BLAST)

001: MMSASARNRS PFTQTQWQEL EHQALVFKYM VTGTPIPPDL IYSIKRSLDT SISSRLFPHH PIGWGCFEMG FGRKVDPEPG RCRRTDGKKW RCSKEAYPDS
101: KYCERHMHRG RNRSRKPVEV SSAISTATNT SQTIPSSYTR NLSLTNPNMT PPSSFPFSPL PSSMPIESQP FSQSYQNSSL NPFFYSQSTS SRPPDADFPP
201: QDATTHQLFM DSGSYSHDEK NYRHVHGIRE DVDERAFFPE ASGSARSYTE SYQQLSMSSY KSYSNSNFQN INDATTNPRQ QEQQQQQHCF VLGTDFKSTR
301: PTKEKEAETA TGQRPLHRFF GEWPPKNTTD SWLDLASNSR IQTDE

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.