Factsheet for Bra001532.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010002.1-P
Bra020616.1-P
Bra036131.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	Bra010002.1-P	AT5G28640.1	15960617
AT3G13960.1	Bra020616.1-P	AT5G28640.1	15960617
AT3G13960.1	Bra036131.1-P	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82503	Canola	nucleus	98.62	97.81
Bra027384.1-P	Field mustard	nucleus	84.02	78.01
AT3G13960.1	Thale cress	nucleus	82.09	75.06
Bra021521.1-P	Field mustard	cytosol	69.97	61.8
VIT_09s0002g01350.t01	Wine grape	nucleus	39.94	39.94
KRH47599	Soybean	nucleus	37.74	39.71
KRH06183	Soybean	nucleus	37.19	37.5
Os06t0204800-00	Rice	nucleus	26.72	32.23
TraesCS6A01G335900.1	Wheat	nucleus	35.54	31.54
HORVU6Hr1G081210.1	Barley	nucleus	35.81	31.48
TraesCS6B01G366700.1	Wheat	nucleus	35.54	31.46
TraesCS6D01G315700.1	Wheat	nucleus	35.54	31.16
Zm00001d018260_P001	Maize	mitochondrion	32.23	31.12
Os02t0776900-01	Rice	mitochondrion, nucleus	33.88	30.98
HORVU7Hr1G034610.4	Barley	mitochondrion	25.62	29.71
OQU76020	Sorghum	mitochondrion, nucleus	27.55	29.59
TraesCS7A01G165600.1	Wheat	nucleus	24.79	29.13
KXG31209	Sorghum	mitochondrion, nucleus	31.68	29.04
TraesCS7B01G070200.1	Wheat	nucleus	25.07	28.8
TraesCS7D01G166400.1	Wheat	nucleus	25.34	28.75
PGSC0003DMT400033847	Potato	nucleus	21.21	28.52
Zm00001d052112_P001	Maize	mitochondrion, nucleus	30.85	27.93
Zm00001d037117_P001	Maize	mitochondrion, nucleus	27.55	27.17
Zm00001d000238_P001	Maize	nucleus	27.82	25.77
Bra015184.1-P	Field mustard	nucleus	22.86	20.75
Bra022667.1-P	Field mustard	nucleus	19.83	20.75
Bra005268.1-P	Field mustard	nucleus	21.49	20.1
Bra023066.1-P	Field mustard	nucleus	19.56	19.29
Bra028541.1-P	Field mustard	nucleus	19.28	19.13
Bra006956.1-P	Field mustard	nucleus	19.28	18.32
Bra017240.1-P	Field mustard	nucleus	18.18	18.23
Bra039334.1-P	Field mustard	nucleus	21.21	18.08
Bra000575.1-P	Field mustard	nucleus	23.42	16.41
Bra017851.1-P	Field mustard	nucleus	19.83	16.11
Bra011781.1-P	Field mustard	nucleus	19.83	15.96
Bra019244.1-P	Field mustard	nucleus	15.98	15.47
Bra013767.1-P	Field mustard	nucleus	14.88	14.56
Bra019640.1-P	Field mustard	nucleus	19.56	13.2

Protein Annotations

MapMan:15.5.52.1	ProteinID:AEK86528	ProteinID:AEK86528.1	EnsemblPlantsGene:Bra001532	EnsemblPlants:Bra001532.1	EnsemblPlants:Bra001532.1-P
UniProt:G1FER1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EMBL:JN180301	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF38	SMART:SM00951	UniParc:UPI00021B0EF4
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

AT3G13960 (E=4e-066) AtGRF5 | AtGRF5 (GROWTH-REGULATING FACTOR 5); transcription activator

Coordinates

chrA03:+:16887639..16889024

Molecular Weight (calculated)

41137.3 Da

IEP (calculated)

8.688

GRAVY (calculated)

-1.026

Length

363 amino acids

Sequence
(BLAST)

001: MMNLSGTSGR TIERPPFTPT QWQELEHQAL IYKYMVSGVP VPPELILSIR RSLDSSLVSR LLPHQSIGWG CYQMGSGRKP DPEPGRCRRT DGKKWRCSRE
101: AHPDSKYCEK HMHRGRNRAK KALDQNQTIA PSTSPSLSFP NKDNPISPTL SSSSSSFIDT YSRFGVGSSN SRGYFNNHSL DYPYPSSCSP KQQQTLEHAS
201: ALSLHQNKSS ISQFNVLASE TDHKDFRHFQ GIGERTFFPE ASKSFQESPY HHQEALATAM NDPYHGSSSD HHHTYSSSSS SSRQRDHHQQ QQHFVLGADE
301: FNKPTRTVFS NTPRQGHQEE EEKDSPKIKK SLHHFFGEDW AQIKNTSDSW LDLSSQSRLD TGS

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.