Factsheet for Bra017240.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43721	Canola	nucleus	98.07	100.0
Bra023066.1-P	Field mustard	nucleus	81.77	80.43
Bra005268.1-P	Field mustard	nucleus	85.36	79.64
AT2G36400.1	Thale cress	nucleus	87.02	79.15
Bra028541.1-P	Field mustard	nucleus	64.09	63.39
Bra006956.1-P	Field mustard	nucleus	65.47	62.04
KRH30830	Soybean	nucleus	46.69	50.45
KRG96154	Soybean	nucleus	53.59	50.0
KRH67865	Soybean	nucleus	52.49	49.48
KRH32671	Soybean	nucleus	45.86	49.4
Solyc09g009200.1.1	Tomato	nucleus	47.24	44.88
VIT_08s0007g03760.t01	Wine grape	nucleus	49.72	43.48
Solyc10g083510.1.1	Tomato	nucleus	45.3	42.16
Bra019640.1-P	Field mustard	nucleus	61.33	41.26
PGSC0003DMT400072628	Potato	nucleus	44.48	41.18
GSMUA_Achr3P22790_001	Banana	nucleus	43.09	39.8
GSMUA_Achr8P07650_001	Banana	extracellular	33.15	37.97
Bra022667.1-P	Field mustard	nucleus	23.76	24.78
Bra017851.1-P	Field mustard	nucleus	24.31	19.69
Bra019244.1-P	Field mustard	nucleus	19.89	19.2
Bra011781.1-P	Field mustard	nucleus	23.76	19.07
Bra013767.1-P	Field mustard	nucleus	19.06	18.6
Bra001532.1-P	Field mustard	nucleus	18.23	18.18
Bra027384.1-P	Field mustard	nucleus	19.06	17.65
Bra015184.1-P	Field mustard	nucleus	18.78	17.0
Bra000575.1-P	Field mustard	nucleus	23.76	16.6
Bra039334.1-P	Field mustard	nucleus	19.06	16.2
Bra021521.1-P	Field mustard	cytosol	15.19	13.38

Protein Annotations

MapMan:15.5.52.1	EnsemblPlantsGene:Bra017240	EnsemblPlants:Bra017240.1	EnsemblPlants:Bra017240.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M4DL59	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF39	SMART:SM00951	UniParc:UPI000254423A	InterPro:WRC_dom	SEG:seg	:

Description

AT2G36400 (E=2e-064) AtGRF3 | AtGRF3 (GROWTH-REGULATING FACTOR 3); transcription activator

Coordinates

chrA04:-:15817105..15819321

Molecular Weight (calculated)

40018.3 Da

IEP (calculated)

7.261

GRAVY (calculated)

-0.767

Length

362 amino acids

Sequence
(BLAST)

001: MDLQLKQWRS QQVQQQQTEP EEQPSAAKIP KHVFDQFQPQ TAASTALPLF TPDPTPSKLS SLSADSSARF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHQHLPHYQ PAWYLGRGAM DPEPGRCRRT DGKKWRCSRD VFAGHKYCER HMHPAAPAPT TTSFAFGGGE EVGQGGSPCF
201: FFSGASNSSS ELLNLSQSCS EMKQDTNNNN KRPYESHNGF GNNTSDGGHT LRHFFDDWPR SEADNNNSSP MTSATCLSIS MPGNSSSDVS LKLSTGNEEE
301: ARSNGRDQQN MNSWWSGGGP HHNNNNHMGG PLAEALRSSS STSPTSVLHQ LGVSTQAFHR TM

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.