Factsheet for Bra015184.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33407	Canola	nucleus	99.75	99.75
AT2G06200.2	Thale cress	endoplasmic reticulum, plasma membrane	51.0	72.08
GSMUA_Achr8P30640_001	Banana	nucleus	22.0	27.5
GSMUA_Achr7P02330_001	Banana	nucleus	21.5	25.0
GSMUA_Achr1P21940_001	Banana	nucleus	23.25	24.54
Bra001532.1-P	Field mustard	nucleus	20.75	22.86
Bra027384.1-P	Field mustard	nucleus	21.0	21.48
Bra022667.1-P	Field mustard	nucleus	18.0	20.75
Bra005268.1-P	Field mustard	nucleus	19.25	19.85
Bra023066.1-P	Field mustard	nucleus	18.0	19.57
Bra017240.1-P	Field mustard	nucleus	17.0	18.78
Bra028541.1-P	Field mustard	nucleus	17.0	18.58
Bra011781.1-P	Field mustard	nucleus	19.75	17.52
Bra017851.1-P	Field mustard	nucleus	19.5	17.45
Bra006956.1-P	Field mustard	nucleus	16.25	17.02
Bra021521.1-P	Field mustard	cytosol	17.25	16.79
Bra019244.1-P	Field mustard	nucleus	15.25	16.27
Bra013767.1-P	Field mustard	nucleus	15.0	16.17
Bra000575.1-P	Field mustard	nucleus	19.25	14.86
Bra039334.1-P	Field mustard	nucleus	14.5	13.62
Bra019640.1-P	Field mustard	nucleus	17.5	13.01

Protein Annotations

MapMan:15.5.52.1	EnsemblPlantsGene:Bra015184	EnsemblPlants:Bra015184.1	EnsemblPlants:Bra015184.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M4DFB2	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
SMART:SM00951	UniParc:UPI0002541223	InterPro:WRC_dom	SEG:seg	:	:

Description

AT2G06200 (E=2e-089) AtGRF6 | AtGRF6 (GROWTH-REGULATING FACTOR 6); transcription activator

Coordinates

chrA07:-:2559226..2561710

Molecular Weight (calculated)

45764.4 Da

IEP (calculated)

9.134

GRAVY (calculated)

-0.578

Length

400 amino acids

Sequence
(BLAST)

001: MGNQRNIWWL RVSNIAHADV KKIICDEAIQ VEVPIIRCGP TTRNGAKVIR EGFFKAVQEI LDQDKETGQN QLLIEEMVQL NIQDQAGPIE VQDQADPIQF
101: RSLSQNRTGL IISQAIPVQT QLQSSPVLLS DPSVRNKTSF IISFLYLFMT TRIHFTESQW EELENQALVF KYIAANIPVP PHLLFLIRRP FLFSSSAYSS
201: SPNFFSPHFG WNVYEMGKER KIDAEPGRCR RTDGKKWRCS KDASPDSKYC ERHMHRGKNR SSRKPLPPPP QFYVPSTPSI FLDFSLSSSR AKSKRTGYMN
301: DFFSIEPSGS IKSCSGLAME GDGGSSKYES LKQREKQTDR SCFIVGTELG TLERPLMLVA KQKQRDDKDY EEEEQRSKRF YKFLDEWPSS KSSGSTSLFI

Best Arabidopsis Sequence Match ( AT2G06200.2 )
(BLAST)

001: MDTLSIKTYL LLSYTFNFPI QIPIFNLSFF FISLSLSLFM ATRIPFTESQ WEELENQALV FKYLAANMPV PPHLLFLIKR PFLFSSSSSS SSSSSFFSPT
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI

Arabidopsis Description

AtGRF6growth-regulating factor 6 [Source:TAIR;Acc:AT2G06200]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.