Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70432 | Canola | nucleus | 57.6 | 67.08 |
| Bra015184.1-P | Field mustard | nucleus | 72.08 | 51.0 |
| CDY33407 | Canola | nucleus | 72.08 | 51.0 |
| GSMUA_Achr8P30640_001 | Banana | nucleus | 31.45 | 27.81 |
| GSMUA_Achr7P02330_001 | Banana | nucleus | 30.39 | 25.0 |
| GSMUA_Achr1P21940_001 | Banana | nucleus | 32.51 | 24.27 |
| AT3G13960.1 | Thale cress | nucleus | 31.8 | 22.67 |
| AT5G53660.1 | Thale cress | nucleus | 23.32 | 18.08 |
| AT2G36400.1 | Thale cress | nucleus | 25.09 | 17.84 |
| AT3G52910.1 | Thale cress | nucleus | 23.32 | 17.37 |
| AT2G45480.3 | Thale cress | nucleus | 20.14 | 13.23 |
| AT2G22840.1 | Thale cress | nucleus | 24.03 | 12.83 |
| AT4G37740.1 | Thale cress | nucleus | 24.03 | 12.71 |
| AT4G24150.1 | Thale cress | nucleus | 20.14 | 11.56 |
Protein Annotations
| MapMan:15.5.52.1 | EntrezGene:815176 | UniProt:A0A1P8B259 | ProteinID:ANM62994.1 | ArrayExpress:AT2G06200 | EnsemblPlantsGene:AT2G06200 |
| RefSeq:AT2G06200 | TAIR:AT2G06200 | RefSeq:AT2G06200-TAIR-G | EnsemblPlants:AT2G06200.2 | Unigene:At.27363 | Symbol:AtGRF6 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0032502 |
| InterPro:GRF | InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | RefSeq:NP_001325112.1 | PFAM:PF08879 |
| PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 | PANTHER:PTHR31602 | SMART:SM00951 | TMHMM:TMhelix |
| UniParc:UPI0000F05025 | InterPro:WRC_dom | SEG:seg | : | : | : |
Description
AtGRF6growth-regulating factor 6 [Source:TAIR;Acc:AT2G06200]
Coordinates
chr2:+:2426176..2427323
Molecular Weight (calculated)
32790.8 Da
IEP (calculated)
8.775
GRAVY (calculated)
-0.636
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTLSIKTYL LLSYTFNFPI QIPIFNLSFF FISLSLSLFM ATRIPFTESQ WEELENQALV FKYLAANMPV PPHLLFLIKR PFLFSSSSSS SSSSSFFSPT
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.