Factsheet for AT2G22840.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83200	Canola	nucleus	66.79	89.85
Bra000575.1-P	Field mustard	nucleus	86.42	88.42
CDY21475	Canola	nucleus	61.13	65.19
AT4G37740.1	Thale cress	nucleus	60.0	59.44
GSMUA_Achr4P32310_001	Banana	nucleus	13.96	51.03
VIT_00s0494g00010.t01	Wine grape	nucleus	51.51	45.73
KRH05542	Soybean	nucleus	45.85	40.5
KRG88739	Soybean	nucleus	45.09	40.24
GSMUA_Achr3P15140_001	Banana	nucleus	36.6	39.75
KRH05543	Soybean	nucleus	45.47	39.57
KRG88736	Soybean	nucleus	44.34	39.23
Zm00001d007465_P001	Maize	nucleus	23.02	39.1
Solyc02g092070.2.1	Tomato	nucleus	41.7	38.91
PGSC0003DMT400055151	Potato	nucleus	43.4	38.4
Os03t0729500-01	Rice	nucleus	32.08	37.28
GSMUA_Achr1P27000_001	Banana	nucleus	29.81	37.26
GSMUA_AchrUn_...	Banana	nucleus	23.4	36.36
KXG28671	Sorghum	nucleus	25.09	35.85
Os12t0484900-01	Rice	nucleus, plastid	27.92	35.84
GSMUA_Achr8P04970_001	Banana	nucleus	37.74	34.42
HORVU4Hr1G037480.5	Barley	nucleus	21.13	34.15
GSMUA_Achr7P27480_001	Banana	nucleus	38.3	33.44
Zm00001d033876_P004	Maize	nucleus	37.36	33.39
Zm00001d006338_P002	Maize	mitochondrion	17.36	33.09
TraesCS4D01G059600.1	Wheat	nucleus	35.28	32.35
EER90936	Sorghum	nucleus	36.6	32.28
TraesCS4A01G255000.1	Wheat	nucleus	35.85	31.3
HORVU4Hr1G010080.2	Barley	nucleus	35.85	31.2
TraesCS4B01G060000.1	Wheat	nucleus	35.66	30.93
Zm00001d013346_P001	Maize	nucleus	33.77	30.6
Zm00001d033396_P003	Maize	nucleus	23.4	28.31
HORVU4Hr1G003440.12	Barley	nucleus	21.32	27.7
TraesCS4A01G291500.1	Wheat	nucleus	20.75	26.96
AT5G53660.1	Thale cress	nucleus	18.3	26.58
TraesCS4D01G020300.1	Wheat	nucleus	20.57	26.27
EER93679	Sorghum	nucleus	21.51	26.21
Os03t0674700-01	Rice	nucleus	20.94	26.06
AT3G52910.1	Thale cress	nucleus	18.49	25.79
Zm00001d013555_P001	Maize	nucleus	21.13	25.69
AT2G36400.1	Thale cress	nucleus	19.25	25.63
AT2G06200.2	Thale cress	endoplasmic reticulum, plasma membrane	12.83	24.03
AT3G13960.1	Thale cress	nucleus	16.42	21.91
AT4G24150.1	Thale cress	nucleus	18.11	19.47
Zm00001d002049_P001	Maize	cytosol, plastid	3.58	19.39
AT2G45480.3	Thale cress	nucleus	12.26	15.08
GSMUA_Achr8P26530_001	Banana	nucleus	40.38	14.92

Protein Annotations

MapMan:15.5.52.1	EntrezGene:816815	ProteinID:AAC32431.1	EMBL:AB493560	ProteinID:AEC07363.1	ArrayExpress:AT2G22840
EnsemblPlantsGene:AT2G22840	RefSeq:AT2G22840	TAIR:AT2G22840	RefSeq:AT2G22840-TAIR-G	EnsemblPlants:AT2G22840.1	TAIR:AT2G22840.1
EMBL:AY102634	Symbol:AtGRF1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009624	GO:GO:0009791
GO:GO:0009987	GO:GO:0019748	GO:GO:0019760	GO:GO:0032502	GO:GO:0043565	GO:GO:0048364
GO:GO:0061062	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	RefSeq:NP_179869.1
UniProt:O81001	PFAM:PF08879	PFAM:PF08880	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0006203	PO:PO:0007064	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0009066	PO:PO:0009074	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0020144	PO:PO:0025022	PO:PO:0025281	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF22	SMART:SM00951	UniParc:UPI0000052A0F	InterPro:WRC_dom	SEG:seg	:

Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]

Coordinates

chr2:+:9728480..9731301

Molecular Weight (calculated)

56404.4 Da

IEP (calculated)

9.678

GRAVY (calculated)

-0.615

Length

530 amino acids

Sequence
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.