Factsheet for Os03t0674700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0733600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Os03t0733600-01	AT5G28640.1	15326298
AT4G37740.1	Os03t0733600-01	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G291500.1	Wheat	nucleus	68.78	71.81
HORVU4Hr1G003440.12	Barley	nucleus	68.08	71.08
TraesCS4D01G020300.1	Wheat	nucleus	69.01	70.84
EER93679	Sorghum	nucleus	70.19	68.74
Zm00001d013555_P001	Maize	nucleus	66.43	64.91
Zm00001d033396_P003	Maize	nucleus	66.2	64.38
CDY55116	Canola	nucleus	22.77	34.4
CDY66422	Canola	nucleus	23.47	31.95
Os02t0678800-01	Rice	nucleus	15.02	30.33
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	15.02	27.12
CDY29584	Canola	nucleus	25.59	26.72
CDX72654	Canola	nucleus	26.29	25.34
CDX83200	Canola	nucleus	23.24	25.13
Bra017851.1-P	Field mustard	nucleus	26.29	25.06
CDX75672	Canola	nucleus	26.06	24.61
Bra011781.1-P	Field mustard	nucleus	26.06	24.61
CDX69322	Canola	nucleus	25.82	23.86
Os03t0729500-01	Rice	nucleus	25.12	23.46
Os12t0484900-01	Rice	nucleus, plastid	22.54	23.24
Os06t0204800-00	Rice	nucleus	15.96	22.59
Os02t0701300-01	Rice	nucleus, plastid	20.89	22.59
VIT_18s0001g08650.t01	Wine grape	nucleus	31.92	22.52
Os04t0600900-02	Rice	plastid	19.72	21.88
Bra000575.1-P	Field mustard	nucleus	26.06	21.43
Os02t0776900-01	Rice	mitochondrion, nucleus	19.95	21.41
KRH05543	Soybean	nucleus	30.28	21.18
Solyc04g077510.2.1	Tomato	nucleus	29.58	21.18
Os11t0551900-01	Rice	nucleus	7.75	21.15
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	29.58	21.11
KRH05542	Soybean	nucleus	29.58	21.0
AT2G22840.1	Thale cress	nucleus	26.06	20.94
KRG88739	Soybean	nucleus	29.11	20.88
Os07t0467500-01	Rice	nucleus	13.15	20.82
AT4G37740.1	Thale cress	nucleus	26.06	20.75
KRG88736	Soybean	nucleus	28.87	20.53
CDY21475	Canola	nucleus	21.13	18.11

Protein Annotations

MapMan:15.5.52.1	EntrezGene:4333705	ProteinID:AAG46075.1	ProteinID:AAR87187.1	ProteinID:ABF98153.1	EMBL:AK058659
ProteinID:BAF12796.1	ProteinID:BAS85710.1	ncoils:Coil	ProteinID:DAA04953.1	ProteinID:EAZ28107.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977
InterPro:IPR014978	EnsemblPlantsGene:Os03g0674700	EnsemblPlants:Os03t0674700-01	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF18	UniProt:Q9FRG8	SMART:SM00951	UniParc:UPI00000A0E3E
InterPro:WRC_dom	RefSeq:XP_015627920.1	SEG:seg	:	:	:

Description

GROWTH-REGULATING FACTOR 9Similar to Growth-regulating factor 3. (Os03t0674700-01)

Coordinates

chr3:+:26679255..26682044

Molecular Weight (calculated)

47854.6 Da

IEP (calculated)

9.759

GRAVY (calculated)

-0.816

Length

426 amino acids

Sequence
(BLAST)

001: MFADFSAAAM ELGEVLGLQG LTVPSTKEGD LSLIKRAAAG SFTQAAAASY PSPFLDEQKM LRFAKAAHTL PSGLDFGREN EQRFLLSRTK RPFTPSQWME
101: LEHQALIYKY LNAKAPIPSS LLISISKSFR SSANRMSWRP LYQGFPNADS DPEPGRCRRT DGKKWRCSKE AMADHKYCER HINRNRHRSR KPVENQSRKT
201: VKETPCAGSL PSSVGQGSFK KAKVNEMKPR SISYWTDSLN RTMANKEKGN KAAEENNGPL LNLTNQQPTL SLFSQLKQQN KPEKFNTAGD SESISSNTML
301: KPWESSNQQN NKSIPFTKMH DRGCLQSVLQ NFSLPKDEKM EFQKSKDSNV MTVPSTFYSS PEDPRVSCHA PNMAQMQEDS ISSSWEMPQG GPLGEILTNS
401: KNPDDSIMKP EARPYGWLLN LEDHAM

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.