Factsheet for Zm00001d013555_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033905_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Zm00001d033905_P001	AT5G28640.1	15326298
AT4G37740.1	Zm00001d033905_P001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93679	Sorghum	nucleus	88.53	88.74
Zm00001d033396_P003	Maize	nucleus	84.4	84.02
Os03t0674700-01	Rice	nucleus	64.91	66.43
HORVU4Hr1G003440.12	Barley	nucleus	59.86	63.97
TraesCS4A01G291500.1	Wheat	nucleus	59.4	63.48
TraesCS4D01G020300.1	Wheat	nucleus	59.86	62.89
Zm00001d042010_P001	Maize	nucleus	7.11	44.93
Zm00001d005387_P001	Maize	nucleus	6.19	43.55
Zm00001d014421_P001	Maize	cytosol	7.34	32.65
CDY55116	Canola	nucleus	20.41	31.56
CDY66422	Canola	nucleus	21.33	29.71
Zm00001d051456_P001	Maize	nucleus	14.22	28.05
Zm00001d007465_P001	Maize	nucleus	18.35	25.64
CDY29584	Canola	nucleus	23.85	25.49
Bra011781.1-P	Field mustard	nucleus	25.23	24.39
CDX75672	Canola	nucleus	25.23	24.39
CDX72654	Canola	nucleus	24.54	24.21
CDX83200	Canola	nucleus	21.79	24.11
Bra017851.1-P	Field mustard	nucleus	24.54	23.94
CDX69322	Canola	nucleus	25.23	23.86
Zm00001d045533_P001	Maize	nucleus	18.81	22.4
Zm00001d035965_P004	Maize	nucleus	19.5	22.31
Zm00001d006338_P002	Maize	mitochondrion	13.76	21.58
Zm00001d037117_P001	Maize	mitochondrion, nucleus	18.12	21.47
Bra000575.1-P	Field mustard	nucleus	25.46	21.43
Zm00001d000238_P001	Maize	nucleus	19.04	21.17
Zm00001d002429_P003	Maize	nucleus	17.43	21.17
AT2G22840.1	Thale cress	nucleus	25.69	21.13
Zm00001d017742_P001	Maize	plastid	19.27	20.59
AT4G37740.1	Thale cress	nucleus	25.23	20.56
Zm00001d026240_P006	Maize	plastid	18.12	19.9
Zm00001d033876_P004	Maize	nucleus	26.15	19.22
Zm00001d018260_P001	Maize	mitochondrion	16.51	19.15
Zm00001d013346_P001	Maize	nucleus	25.69	19.15
Zm00001d006348_P001	Maize	nucleus	11.93	19.05
Zm00001d021362_P001	Maize	extracellular, nucleus	11.7	18.96
Zm00001d052112_P001	Maize	mitochondrion, nucleus	17.2	18.7
CDY21475	Canola	nucleus	20.64	18.11
Zm00001d002049_P001	Maize	cytosol, plastid	2.06	9.18

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A1D6GKK4	ProteinID:AQK63864.1	ProteinID:AQK63866.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF18
SMART:SM00951	UniParc:UPI000842968A	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d013555	EnsemblPlants:Zm00001d013555_P001	EnsemblPlants:Zm00001d013555_T001
SEG:seg	:	:	:	:	:

Description

Growth-regulating factor 2

Coordinates

chr5:-:14173339..14176252

Molecular Weight (calculated)

47800.3 Da

IEP (calculated)

8.742

GRAVY (calculated)

-0.682

Length

436 amino acids

Sequence
(BLAST)

001: MSAEFCAAAG VVAMELGVGD VLGLQQGIAI TAPSPRDSDL GLLKRAGLTQ AAAAAPYPSP FLDEEKMLRF SKAAHTLHSG LDFGGPGEQA FLLSRTKMPF
101: TPSQWMELEH QALIYKYLNA KAPPYLPACS FQSARASDHP IESLTDFSNA VSWRPLYQGY TNADSDPEPG RCRRTDGKKW RCSKEAMADH KYCERHINRN
201: RHRSRKPVEN QPKKTTKEVP AAAGSLPCAG PQGSLKKAKV NDSKPGTVSY WADSLNRTML SREKANKPTE DSSLLLTSTN SQPTLSLLSQ LKQQNKPDKL
301: GPTLENESNP DTILKAWGGN QPSHKSISST ERHDAESLQS VLQNFSLAQN EKMESEKNKY SDSVLVSSTF YSADGPRATC LTPNMTQVKQ DCISSSWEMP
401: QGGPLGEILT NSKNSKDLSK CKPRSYGWLL NLDHAP

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.