Factsheet for Zm00001d033876_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033905_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Zm00001d033905_P001	AT5G28640.1	15326298
AT4G37740.1	Zm00001d033905_P001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90936	Sorghum	nucleus	91.74	90.52
Os03t0729500-01	Rice	nucleus	62.06	80.7
Zm00001d013346_P001	Maize	nucleus	76.9	77.95
TraesCS4D01G059600.1	Wheat	nucleus	69.65	71.45
TraesCS4A01G255000.1	Wheat	nucleus	72.51	70.84
HORVU4Hr1G010080.2	Barley	nucleus	72.51	70.61
TraesCS4B01G060000.1	Wheat	nucleus	72.68	70.54
GSMUA_Achr3P15140_001	Banana	nucleus	40.13	48.77
CDY55116	Canola	nucleus	22.43	47.16
Zm00001d007465_P001	Maize	nucleus	24.79	47.12
GSMUA_Achr8P04970_001	Banana	nucleus	46.04	46.99
Zm00001d005387_P001	Maize	nucleus	4.89	46.77
GSMUA_Achr7P27480_001	Banana	nucleus	47.05	45.96
GSMUA_Achr1P27000_001	Banana	nucleus	32.55	45.52
Zm00001d042010_P001	Maize	nucleus	5.23	44.93
CDY66422	Canola	nucleus	22.93	43.45
CDX83200	Canola	nucleus	27.82	41.88
Zm00001d006338_P002	Maize	mitochondrion	18.55	39.57
GSMUA_AchrUn_...	Banana	nucleus	22.26	38.71
CDX72654	Canola	nucleus	28.84	38.69
Bra000575.1-P	Field mustard	nucleus	33.39	38.22
CDY29584	Canola	nucleus	26.14	37.99
Bra017851.1-P	Field mustard	nucleus	28.33	37.58
AT2G22840.1	Thale cress	nucleus	33.39	37.36
CDX75672	Canola	nucleus	27.82	36.59
Bra011781.1-P	Field mustard	nucleus	27.66	36.36
CDX69322	Canola	nucleus	28.16	36.23
AT4G37740.1	Thale cress	nucleus	31.03	34.39
Zm00001d051456_P001	Maize	nucleus	12.82	34.39
Zm00001d014421_P001	Maize	cytosol	5.23	31.63
CDY21475	Canola	nucleus	24.28	28.97
Zm00001d002429_P003	Maize	nucleus	16.69	27.58
Zm00001d017742_P001	Maize	plastid	18.72	27.21
Zm00001d033396_P003	Maize	nucleus	19.9	26.94
Zm00001d002049_P001	Maize	cytosol, plastid	4.38	26.53
Zm00001d000238_P001	Maize	nucleus	17.54	26.53
Zm00001d035965_P004	Maize	nucleus	17.03	26.51
Zm00001d026240_P006	Maize	plastid	17.71	26.45
Zm00001d013555_P001	Maize	nucleus	19.22	26.15
Zm00001d045533_P001	Maize	nucleus	16.02	25.96
Zm00001d018260_P001	Maize	mitochondrion	16.36	25.8
Zm00001d037117_P001	Maize	mitochondrion, nucleus	15.51	25.0
Zm00001d052112_P001	Maize	mitochondrion, nucleus	16.53	24.44
Zm00001d006348_P001	Maize	nucleus	9.95	21.61
Zm00001d021362_P001	Maize	extracellular, nucleus	9.78	21.56
GSMUA_Achr8P26530_001	Banana	nucleus	47.55	19.67

Protein Annotations

EntrezGene:100285734	MapMan:15.5.52.1	UniProt:B6U8T2	EMBL:BT067085	EMBL:EU973647	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977
InterPro:IPR014978	EMBL:KJ726877	ProteinID:ONM08860.1	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF40	SMART:SM00951	UniParc:UPI000182F424	InterPro:WRC_dom
EnsemblPlantsGene:Zm00001d033876	EnsemblPlants:Zm00001d033876_P004	EnsemblPlants:Zm00001d033876_T004	SEG:seg	:	:

Description

GRF-transcription factor 1Growth-regulating factor 2

Coordinates

chr1:+:277130909..277134992

Molecular Weight (calculated)

61876.3 Da

IEP (calculated)

7.091

GRAVY (calculated)

-0.322

Length

593 amino acids

Sequence
(BLAST)

001: MDLGGSVVMD AGASELGLLG GGSSRLLKHG RGPNAAGGDD DVWGGGRAKQ PRTGTAPVVA GDVAAATKAA AAPFLLGSCS PGHGGEQMLS FSSAAAAAAA
101: SCASSTAAAD GGGAMPLYYG TPASCSGLSS VSLSTSMQGA MARVRAPFTP SQWIELEHQA LIYKYLAANS PIPHSLLIPI RRSLAASPYP PSYFGTSTLG
201: WGSFQLGYSG NADLEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR SRKHVEGQPG HAAKAMSAVA AAAAAAAQPA ALAGAGAPAA GLTVNQHQLP
301: AKSYATGATD PCSLQYNREL VNKQNESENM QDSDNLSMLT SMNTGNTGSV FPFSKQNTNP FEVTSSRLEF GLVSSDSLMS SPHSSLENVN LLGSQSMNEH
401: QNPASLQHFV DWPRTPAQGG LSWPEAEDMQ AQRSQLSISA PMASSELSSA STSPIHEKLM LSPLKLSREY SPTGLGIAAN RDEASQLEAT WATMFRDSSM
501: GGPLGEVLAK NGNVEARNYL SAPLNLLTDY WDSSHGMESS PVGVLQKTTA FGSVSSSTGS SPRVENHGAY DGFGNLRDDL GSIVVRHPSI RLV

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.