Factsheet for Zm00001d005387_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042010_P001	Maize	nucleus	79.03	71.01
Zm00001d014421_P001	Maize	cytosol	87.1	55.1
Zm00001d051456_P001	Maize	nucleus	50.0	14.03
Zm00001d002429_P003	Maize	nucleus	62.9	10.86
Zm00001d006348_P001	Maize	nucleus	46.77	10.62
GSMUA_Achr6P01270_001	Banana	nucleus	56.45	10.42
Zm00001d021362_P001	Maize	extracellular, nucleus	45.16	10.41
Zm00001d045533_P001	Maize	nucleus	61.29	10.38
Zm00001d035965_P004	Maize	nucleus	61.29	9.97
Zm00001d026240_P006	Maize	plastid	62.9	9.82
Zm00001d006338_P002	Maize	mitochondrion	43.55	9.71
Zm00001d017742_P001	Maize	plastid	59.68	9.07
Zm00001d018260_P001	Maize	mitochondrion	54.84	9.04
Zm00001d007465_P001	Maize	nucleus	45.16	8.97
HORVU0Hr1G026650.1	Barley	mitochondrion, nucleus	16.13	8.77
Zm00001d052112_P001	Maize	mitochondrion, nucleus	54.84	8.48
Zm00001d000238_P001	Maize	nucleus	51.61	8.16
Zm00001d037117_P001	Maize	mitochondrion, nucleus	48.39	8.15
KRH76298	Soybean	nucleus	53.23	7.21
KRH65240	Soybean	nucleus	53.23	7.05
Zm00001d033396_P003	Maize	nucleus	45.16	6.39
Zm00001d013555_P001	Maize	nucleus	43.55	6.19
Zm00001d033876_P004	Maize	nucleus	46.77	4.89
Zm00001d013346_P001	Maize	nucleus	45.16	4.79
Zm00001d002049_P001	Maize	cytosol, plastid	1.61	1.02
CDX76250	Canola	cytosol, golgi, mitochondrion, nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A1D6EM87	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:IPR014977	ProteinID:ONM20983.1	PFAM:PF08879	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF8	UniParc:UPI000844FB26	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d005387	EnsemblPlants:Zm00001d005387_P001
EnsemblPlants:Zm00001d005387_T001	:	:	:	:	:

Description

Growth-regulating factor 6

Coordinates

chr2:+:171976326..171978043

Molecular Weight (calculated)

7520.9 Da

IEP (calculated)

9.841

GRAVY (calculated)

-1.695

Length

62 amino acids

Sequence
(BLAST)

1: MDDGRKLGYE PYFGKTVYPE PERCRCTDDK KWRCSNETTP VSKYCERQMH RGHNRSRKHV KK

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.