Factsheet for Zm00001d018260_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033905_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	Zm00001d033905_P001	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31209	Sorghum	mitochondrion, nucleus	78.99	75.0
Zm00001d052112_P001	Maize	mitochondrion, nucleus	76.86	72.07
Os02t0776900-01	Rice	mitochondrion, nucleus	71.28	67.51
HORVU6Hr1G081210.1	Barley	nucleus	67.55	61.5
TraesCS6A01G335900.1	Wheat	nucleus	66.76	61.37
TraesCS6B01G366700.1	Wheat	nucleus	66.76	61.22
TraesCS6D01G315700.1	Wheat	nucleus	67.02	60.87
Zm00001d005387_P001	Maize	nucleus	9.04	54.84
Zm00001d042010_P001	Maize	nucleus	9.04	49.28
VIT_09s0002g01350.t01	Wine grape	nucleus	39.89	41.32
Zm00001d037117_P001	Maize	mitochondrion, nucleus	38.56	39.4
Zm00001d014421_P001	Maize	cytosol	9.84	37.76
Zm00001d000238_P001	Maize	nucleus	39.36	37.76
KRH12524	Soybean	nucleus	35.9	36.99
GSMUA_Achr8P30640_001	Banana	nucleus	31.12	36.56
KRH37478	Soybean	nucleus	35.37	36.44
KRH47599	Soybean	nucleus	33.24	36.23
Solyc07g041640.2.1	Tomato	nucleus	32.98	36.05
KRH02627	Soybean	nucleus	35.11	35.01
KRH06183	Soybean	nucleus	33.51	35.0
VIT_11s0016g01250.t01	Wine grape	nucleus	35.9	34.88
KRH19281	Soybean	nucleus	35.11	34.38
GSMUA_Achr7P02330_001	Banana	nucleus	30.32	33.14
Zm00001d002429_P003	Maize	nucleus	31.38	32.87
CDX71979	Canola	nucleus	33.51	32.73
CDY39081	Canola	nucleus	34.57	32.66
Bra001532.1-P	Field mustard	nucleus	31.12	32.23
PGSC0003DMT400033847	Potato	nucleus	22.87	31.85
AT3G13960.1	Thale cress	nucleus	33.51	31.74
CDX97531	Canola	nucleus	32.71	31.7
CDY55209	Canola	nucleus	32.71	31.54
CDX82503	Canola	nucleus	30.59	31.42
CDX75742	Canola	nucleus	30.05	30.96
Bra027384.1-P	Field mustard	nucleus	32.18	30.95
Zm00001d045533_P001	Maize	nucleus	29.52	30.33
GSMUA_Achr1P21940_001	Banana	nucleus	30.32	30.08
Zm00001d017742_P001	Maize	plastid	32.45	29.9
Zm00001d026240_P006	Maize	plastid	30.85	29.22
Zm00001d035965_P004	Maize	nucleus	28.99	28.61
Bra021521.1-P	Field mustard	cytosol	29.79	27.25
Zm00001d051456_P001	Maize	nucleus	15.43	26.24
Zm00001d007465_P001	Maize	nucleus	18.35	22.12
Zm00001d006338_P002	Maize	mitochondrion	16.22	21.94
Zm00001d006348_P001	Maize	nucleus	14.63	20.15
Zm00001d021362_P001	Maize	extracellular, nucleus	14.1	19.7
Zm00001d033396_P003	Maize	nucleus	21.01	18.04
Zm00001d013555_P001	Maize	nucleus	19.15	16.51
Zm00001d033876_P004	Maize	nucleus	25.8	16.36
Zm00001d013346_P001	Maize	nucleus	24.73	15.9
Zm00001d002049_P001	Maize	cytosol, plastid	2.39	9.18

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A1D6HLY2	ProteinID:AQK75389.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF23	SMART:SM00951
UniParc:UPI000844A333	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d018260	EnsemblPlants:Zm00001d018260_P001	EnsemblPlants:Zm00001d018260_T001	SEG:seg

Description

growth-regulating factor9Growth-regulating factor 6

Coordinates

chr5:-:217546954..217548912

Molecular Weight (calculated)

41109.2 Da

IEP (calculated)

8.280

GRAVY (calculated)

-0.717

Length

376 amino acids

Sequence
(BLAST)

001: MMMMSGRAAT AGRYPFTASQ WQELEHQALI YKCLASGKPI PSYLMPPLRR ILDSALATSP SLAAFPPQPS LGWGGCFGMG FSRKPADEDP EPGRCRRTDG
101: KKWRCSKEAY PDSKYCEKHM HRGKNRSRKP VEMSLATPAP ASSATSAAAA ATSSSQAPSY HSPAPAVPYH APYGAAYHHT QTQVTMSPFH LLHLETTHPH
201: PPPPPPPPYY YADQRDYAYG KEVGERAFFS DGAGERDRQQ QAAGQWQFKQ LGTMEATKQP CTTPLLVPAA GYGHGAASPY GVGQAKEDEE EEETRRQQQH
301: CFVLGADLRL AERPSGAHDA AAQKPLRHFI DEWPHEKGSN KAGSWMGGLD GETTQLSMSI PMAAAADLPV TSRYRT

Best Arabidopsis Sequence Match ( AT2G06200.2 )
(BLAST)

001: MDTLSIKTYL LLSYTFNFPI QIPIFNLSFF FISLSLSLFM ATRIPFTESQ WEELENQALV FKYLAANMPV PPHLLFLIKR PFLFSSSSSS SSSSSFFSPT
101: LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR KPPPTQFTPN LFLDSSSRRR RSGYMDDFFS IEPSGSIKSC
201: SGSAMEDNDD GSCRGINNEE KQPDRHCFIL GTDLRTRERP LMLEEKLKQR DHDNEEEQGS KRFYRFLDEW PSSKSSVSTS LFI

Arabidopsis Description

AtGRF6growth-regulating factor 6 [Source:TAIR;Acc:AT2G06200]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.