Factsheet for HORVU6Hr1G081210.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G010610.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	HORVU4Hr1G010610.1	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G366700.1	Wheat	nucleus	94.92	95.61
TraesCS6A01G335900.1	Wheat	nucleus	94.67	95.6
TraesCS6D01G315700.1	Wheat	nucleus	95.16	94.93
Os02t0776900-01	Rice	mitochondrion, nucleus	76.27	79.35
KXG31209	Sorghum	mitochondrion, nucleus	69.01	71.97
Zm00001d018260_P001	Maize	mitochondrion	61.5	67.55
Zm00001d052112_P001	Maize	mitochondrion, nucleus	63.92	65.84
HORVU7Hr1G034610.4	Barley	mitochondrion	38.74	51.12
VIT_09s0002g01350.t01	Wine grape	nucleus	37.05	42.15
KRH12524	Soybean	nucleus	36.32	41.1
KRH37478	Soybean	nucleus	35.84	40.55
Solyc07g041640.2.1	Tomato	nucleus	32.69	39.24
VIT_11s0016g01250.t01	Wine grape	nucleus	35.59	37.98
KRH47599	Soybean	nucleus	31.72	37.97
KRH02627	Soybean	nucleus	34.38	37.67
KRH19281	Soybean	nucleus	34.62	37.24
GSMUA_Achr8P30640_001	Banana	nucleus	28.81	37.19
KRH06183	Soybean	nucleus	31.96	36.67
Bra001532.1-P	Field mustard	nucleus	31.48	35.81
CDX71979	Canola	nucleus	32.69	35.06
CDX82503	Canola	nucleus	30.99	34.97
PGSC0003DMT400033847	Potato	nucleus	22.76	34.81
CDY39081	Canola	nucleus	33.17	34.42
CDX97531	Canola	nucleus	32.2	34.28
CDX75742	Canola	nucleus	30.02	33.97
CDY55209	Canola	nucleus	31.96	33.85
AT3G13960.1	Thale cress	nucleus	31.96	33.25
Bra027384.1-P	Field mustard	nucleus	31.48	33.25
GSMUA_Achr7P02330_001	Banana	nucleus	27.36	32.85
GSMUA_Achr1P21940_001	Banana	nucleus	28.09	30.61
HORVU7Hr1G008680.11	Barley	cytosol, mitochondrion, nucleus, vacuole	28.57	29.57
Bra021521.1-P	Field mustard	cytosol	28.09	28.22
HORVU6Hr1G068370.1	Barley	nucleus	26.39	27.95
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	14.53	26.79
HORVU6Hr1G065740.4	Barley	nucleus	13.56	26.29
HORVU0Hr1G016590.2	Barley	cytosol, nucleus	13.08	25.47
HORVU0Hr1G016610.1	Barley	plastid	25.67	25.42
HORVU2Hr1G094470.2	Barley	nucleus	14.77	24.11
HORVU4Hr1G037480.5	Barley	nucleus	17.19	21.65
HORVU4Hr1G003440.12	Barley	nucleus	19.85	20.1
HORVU6Hr1G035720.1	Barley	cytosol, mitochondrion, nucleus	14.77	19.43
HORVU0Hr1G026650.1	Barley	mitochondrion, nucleus	5.33	19.3
HORVU2Hr1G054270.3	Barley	plastid	13.8	19.0
HORVU4Hr1G010080.2	Barley	nucleus	23.97	16.26

Protein Annotations

MapMan:15.5.52.1	EMBL:AK353813	UniProt:F2CQB1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	EnsemblPlantsGene:HORVU6Hr1G081210	EnsemblPlants:HORVU6Hr1G081210.1	InterPro:IPR014977
InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF23	SMART:SM00951	UniParc:UPI0002004593	InterPro:WRC_dom	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CQB1]

Coordinates

chrchr6H:+:544655166..544657178

Molecular Weight (calculated)

45004.2 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.799

Length

413 amino acids

Sequence
(BLAST)

001: MMMMGGRAGA GGVGAGGGRC PFTATQWQEL EHQALIYKYM ASGVPIPSDL LLPLRRSFLL DSALATSPSL AFPPQAALGW GCFGMGFGRK PEDPEPGRCR
101: RTDGKKWRCS REAYPDSKYC EKHMHRGKNR SRKPVEMSLA TPPPPPSSSA SSSSSNVHSA VTVATTTTSP APSYHRHAAT THDAAPYHAL YGGPYASAGR
201: QQHGSAYHHA AQVSPFHLHL DTTHPHPPPS YYSTMDHSKD SYAYGHSVKE VHGGGEHAFF SSDVTTDRDH QHHQHHGSAG GHGQWQFKQL GGMEPKQHNP
301: TSLFPGCGGY GNNAAYAIDL SGKEEAEEKE RRQQQQHCFL LGADLRLDKP SSGHGDSADQ KPLRPFFDEW PHEKTGNKGS WMGLEGETQL SISIPMTAND
401: LPITTTSRYH HGE

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.