Factsheet for TraesCS6A01G335900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G250600.1
TraesCS4B01G064000.1
TraesCS4D01G062900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	TraesCS4A01G250600.1	AT5G28640.1	15960617
AT3G13960.1	TraesCS4B01G064000.1	AT5G28640.1	15960617
AT3G13960.1	TraesCS4D01G062900.1	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G366700.1	Wheat	nucleus	98.53	98.29
TraesCS6D01G315700.1	Wheat	nucleus	99.27	98.07
HORVU6Hr1G081210.1	Barley	nucleus	95.6	94.67
Os02t0776900-01	Rice	mitochondrion, nucleus	76.53	78.84
KXG31209	Sorghum	mitochondrion, nucleus	68.95	71.21
Zm00001d018260_P001	Maize	mitochondrion	61.37	66.76
Zm00001d052112_P001	Maize	mitochondrion, nucleus	64.06	65.34
TraesCS7A01G165600.1	Wheat	nucleus	37.41	49.51
VIT_09s0002g01350.t01	Wine grape	nucleus	36.92	41.6
KRH12524	Soybean	nucleus	36.43	40.82
KRH37478	Soybean	nucleus	35.94	40.27
Solyc07g041640.2.1	Tomato	nucleus	32.76	38.95
KRH47599	Soybean	nucleus	32.76	38.84
VIT_11s0016g01250.t01	Wine grape	nucleus	35.7	37.73
KRH06183	Soybean	nucleus	33.01	37.5
KRH02627	Soybean	nucleus	34.23	37.14
KRH19281	Soybean	nucleus	34.47	36.72
GSMUA_Achr8P30640_001	Banana	nucleus	28.36	36.25
Bra001532.1-P	Field mustard	nucleus	31.54	35.54
CDX71979	Canola	nucleus	33.01	35.06
CDX82503	Canola	nucleus	31.05	34.7
PGSC0003DMT400033847	Potato	nucleus	22.74	34.44
CDY39081	Canola	nucleus	33.5	34.42
CDX97531	Canola	nucleus	32.52	34.28
CDY55209	Canola	nucleus	32.27	33.85
CDX75742	Canola	nucleus	30.07	33.7
AT3G13960.1	Thale cress	nucleus	32.27	33.25
Bra027384.1-P	Field mustard	nucleus	31.78	33.25
GSMUA_Achr7P02330_001	Banana	nucleus	27.38	32.56
TraesCS2A01G435100.1	Wheat	nucleus	29.83	31.77
TraesCS7A01G049100.1	Wheat	nucleus	28.61	31.62
TraesCS4A01G434900.1	Wheat	nucleus	28.61	31.54
GSMUA_Achr1P21940_001	Banana	nucleus	28.12	30.34
TraesCS6A01G257600.1	Wheat	nucleus	14.91	28.77
Bra021521.1-P	Field mustard	cytosol	28.12	27.98
TraesCS6A01G269600.1	Wheat	nucleus	27.63	27.7
TraesCS2A01G398300.2	Wheat	nucleus	14.91	27.11
TraesCS4A01G291500.1	Wheat	nucleus	18.83	18.87
TraesCS6A01G174800.1	Wheat	cytosol, mitochondrion, nucleus	13.94	18.1
TraesCS2A01G238700.1	Wheat	nucleus	13.69	17.55
TraesCS4A01G255000.1	Wheat	nucleus	22.74	15.32

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF23	SMART:SM00951	EnsemblPlantsGene:TraesCS6A01G335900	EnsemblPlants:TraesCS6A01G335900.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:568515939..568517944

Molecular Weight (calculated)

44788.8 Da

IEP (calculated)

7.683

GRAVY (calculated)

-0.833

Length

409 amino acids

Sequence
(BLAST)

001: MMMMGGRAGA GGVGAGGGRC PFTATQWQEL EHQALIYKYM ASGVPIPSDL LLPLRRSFLL DSALATSPSL AFPPQAALGW GCFGMGFGRK AEDPEPGRCR
101: RTDGKKWRCS KEAYPDSKYC EKHMHRGKNR SRKPVEMSLA TPPPPPSSSA SSSSSNVHSA VNVATTTTSP APSYHRHAAA THDTTPYHAL YGGPYSSAGR
201: QQHASAYHHA AQVSPFHLHL DTTHPHPPPS YYSTMDHSKD SYAYGHSVKE VHGGGEHAFF SSDVSTDRDH HHHQHQHHAS AGGNGQWQFK QLGGMEPKQH
301: NPTSLFPGYG NNAAYAIDLS SKEEDEEKER RQQQQHCFLL GADLRLDKPS SGHGDSADQK PLRPFFDEWP HEKTGSKGSW MGLEGETQLS ISIANELPIT
401: TTSRYHHGE

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.