Factsheet for TraesCS6A01G174800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G163900.1	Wheat	plastid	72.7	92.71
TraesCS6B01G204300.1	Wheat	plastid	68.57	89.26
HORVU6Hr1G035720.1	Barley	cytosol, mitochondrion, nucleus	86.67	86.94
TraesCS6A01G257600.1	Wheat	nucleus	14.92	22.17
TraesCS2A01G398300.2	Wheat	nucleus	15.24	21.33
TraesCS4A01G434900.1	Wheat	nucleus	19.68	16.71
TraesCS7A01G049100.1	Wheat	nucleus	19.37	16.49
TraesCS7A01G165600.1	Wheat	nucleus	15.87	16.18
TraesCS4A01G291500.1	Wheat	nucleus	19.68	15.2
TraesCS6A01G269600.1	Wheat	nucleus	19.68	15.2
TraesCS2A01G238700.1	Wheat	nucleus	15.24	15.05
TraesCS2A01G435100.1	Wheat	nucleus	18.1	14.84
TraesCS6A01G335900.1	Wheat	nucleus	18.1	13.94
TraesCS4A01G255000.1	Wheat	nucleus	23.49	12.19

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF2	SMART:SM00951	EnsemblPlantsGene:TraesCS6A01G174800	EnsemblPlants:TraesCS6A01G174800.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:188250927..188251979

Molecular Weight (calculated)

33606.7 Da

IEP (calculated)

8.038

GRAVY (calculated)

-0.350

Length

315 amino acids

Sequence
(BLAST)

001: MKKLELDDGM VAGNGDAGQR PGVATLMPPA ATHVPVASTM GAAGGLFTAT QWVELQRQSL IYNHMAASLP IPSYLLFSNI NPAAAAAAAA APSQAAPPYY
101: CCYNTPLLVH HYQAQQAAQM SMLLQCMQQA VARRRCGRTD GKKWRCARDA EPDQKYCQRH LNRVGRARPP PSARKQQHQH AAAAVVAHHR DRDKSAMTAP
201: AAIHTSHGNK SSGNTMLRED DDDYSRGLLD FTGGVCLAEQ RENRLSLNYD NIAELYCNRQ VTATPTATAS AAASATAMDD DAIHHGAAAT WVGIGGPLGE
301: ALGLAVEIQW PAGST

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.