Factsheet for TraesCS4A01G291500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G250600.1
TraesCS4B01G064000.1
TraesCS4D01G062900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	TraesCS4A01G250600.1	AT5G28640.1	15326298
AT2G22840.1	TraesCS4B01G064000.1	AT5G28640.1	15326298
AT2G22840.1	TraesCS4D01G062900.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4A01G250600.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4B01G064000.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4D01G062900.1	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G020300.1	Wheat	nucleus	97.06	95.42
HORVU4Hr1G003440.12	Barley	nucleus	90.93	90.93
Os03t0674700-01	Rice	nucleus	71.81	68.78
EER93679	Sorghum	nucleus	66.67	62.53
Zm00001d013555_P001	Maize	nucleus	63.48	59.4
Zm00001d033396_P003	Maize	nucleus	62.99	58.68
CDY55116	Canola	nucleus	22.55	32.62
CDY66422	Canola	nucleus	23.28	30.35
TraesCS6A01G257600.1	Wheat	nucleus	15.44	29.72
TraesCS2A01G398300.2	Wheat	nucleus	15.93	28.89
CDY29584	Canola	nucleus	25.49	25.49
CDX72654	Canola	nucleus	26.23	24.21
CDX83200	Canola	nucleus	23.28	24.11
CDX69322	Canola	nucleus	27.21	24.08
Bra011781.1-P	Field mustard	nucleus	26.47	23.95
CDX75672	Canola	nucleus	26.47	23.95
Bra017851.1-P	Field mustard	nucleus	26.23	23.94
TraesCS7A01G049100.1	Wheat	nucleus	21.08	23.24
TraesCS4A01G434900.1	Wheat	nucleus	21.08	23.18
TraesCS7A01G165600.1	Wheat	nucleus	17.4	22.98
VIT_18s0001g08650.t01	Wine grape	nucleus	32.6	22.02
TraesCS2A01G435100.1	Wheat	nucleus	20.1	21.35
AT2G22840.1	Thale cress	nucleus	26.96	20.75
Solyc04g077510.2.1	Tomato	nucleus	30.15	20.67
Bra000575.1-P	Field mustard	nucleus	26.23	20.66
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	30.15	20.6
KRG88739	Soybean	nucleus	29.41	20.2
AT4G37740.1	Thale cress	nucleus	26.23	20.0
TraesCS6A01G174800.1	Wheat	cytosol, mitochondrion, nucleus	15.2	19.68
KRH05542	Soybean	nucleus	28.92	19.67
KRH05543	Soybean	nucleus	28.92	19.38
KRG88736	Soybean	nucleus	28.43	19.37
TraesCS6A01G269600.1	Wheat	nucleus	19.36	19.36
TraesCS6A01G335900.1	Wheat	nucleus	18.87	18.83
TraesCS4A01G255000.1	Wheat	nucleus	27.7	18.62
CDY21475	Canola	nucleus	21.81	17.91
TraesCS2A01G238700.1	Wheat	nucleus	12.99	16.61

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF18	SMART:SM00951	EnsemblPlantsGene:TraesCS4A01G291500	EnsemblPlants:TraesCS4A01G291500.1
InterPro:WRC_dom	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:594533060..594535487

Molecular Weight (calculated)

45330.1 Da

IEP (calculated)

9.041

GRAVY (calculated)

-0.842

Length

408 amino acids

Sequence
(BLAST)

001: MELGQVLGYT PPATKDARSG GGFTQAAACP YPYPSPFLDE QKMLSFSKAA AAHQPPSGMD FGRSNEQRLL LARSKMPFTP SQWMELEHQA LIYKYLNAKA
101: PIPSGLLISI SKSFRPSSDR MPWRPVYQGF TNADSDPEPG RCRRTDGKKW RCSKEAMAEH KYCERHINRN RHRSRKPVEN QTRKNAKETP AAGSISAAVS
201: QGGCKKAKAG DELKPGSVSY WTDNLNRAMV SKARGNNPEE GNSAPLLNST NQQHTLSLFS QLKQQSKPDK FSPAVDSESI SSNTVLKPWE RSNQQSSKDV
301: SSTTLHDRGC LQSVLQDFSM HKNDKIESQK NNASVPSTFY SSTEGRHISC LASNMMQVQE DCISSSWEIP QGGPLGEILT NSKNTDDLTN KCESRSYGWL
401: LSLDEHEM

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.