Factsheet for VIT_18s0001g08650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077510.2.1	Tomato	nucleus	62.58	63.53
KRH05542	Soybean	nucleus	62.75	63.17
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	62.42	63.15
VIT_00s0494g00010.t01	Wine grape	nucleus	61.42	62.14
KRG88739	Soybean	nucleus	61.09	62.12
KRG88736	Soybean	nucleus	61.09	61.6
GSMUA_Achr4P32310_001	Banana	nucleus	14.57	60.69
KRH05543	Soybean	nucleus	61.09	60.59
Os03t0729500-01	Rice	nucleus	38.24	50.66
Os12t0484900-01	Rice	nucleus, plastid	30.63	44.79
TraesCS4D01G059600.1	Wheat	nucleus	41.72	43.6
KXG28671	Sorghum	nucleus	26.32	42.86
HORVU4Hr1G010080.2	Barley	nucleus	42.88	42.53
EER90936	Sorghum	nucleus	42.22	42.43
HORVU4Hr1G037480.5	Barley	nucleus	22.85	42.07
TraesCS4B01G060000.1	Wheat	nucleus	42.38	41.9
TraesCS4A01G255000.1	Wheat	nucleus	42.05	41.85
VIT_16s0039g01450.t01	Wine grape	nucleus	21.19	40.25
VIT_02s0025g04910.t01	Wine grape	nucleus	13.74	39.71
VIT_02s0025g02680.t01	Wine grape	nucleus	11.59	39.11
Zm00001d006338_P002	Maize	mitochondrion	16.56	35.97
TraesCS4A01G291500.1	Wheat	nucleus	22.02	32.6
HORVU4Hr1G003440.12	Barley	nucleus	21.69	32.11
Os03t0674700-01	Rice	nucleus	22.52	31.92
TraesCS4D01G020300.1	Wheat	nucleus	21.69	31.57
VIT_09s0002g01350.t01	Wine grape	nucleus	18.87	31.41
VIT_08s0007g03760.t01	Wine grape	nucleus	21.36	31.16
EER93679	Sorghum	nucleus	22.02	30.57
VIT_11s0016g01250.t01	Wine grape	nucleus	18.87	29.46
Zm00001d002049_P001	Maize	cytosol, plastid	4.64	28.57
VIT_16s0098g01080.t01	Wine grape	nucleus	26.66	27.95
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	14.24	21.39

Protein Annotations

EntrezGene:100260890	wikigene:100260890	MapMan:15.5.52.1	ProteinID:CCB45726	ProteinID:CCB45726.1	UniProt:F6H175
EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EntrezGene:LOC100260890	wikigene:LOC100260890	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951
UniParc:UPI00015C824B	ArrayExpress:VIT_18s0001g08650	EnsemblPlantsGene:VIT_18s0001g08650	EnsemblPlants:VIT_18s0001g08650.t01	unigene:Vvi.25444	InterPro:WRC_dom
RefSeq:XP_002283504	RefSeq:XP_002283504.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:7086494..7089975

Molecular Weight (calculated)

65435.3 Da

IEP (calculated)

8.569

GRAVY (calculated)

-0.606

Length

604 amino acids

Sequence
(BLAST)

001: MDFGVMGLDG LVGSDTGLAS LGSDPETKQK WYGSGFLKQE RSGATEDDWK SLKIAKTDDF SASKAMLLPH RNALLRSNTT LFSDAGQQEQ QMLSFSSPKS
101: EPLFMERSSQ NAIFPYYHHT SSAYNRNTGY SSGNLNGGSM HGVMAGVRGP FTQSQWMELE HQALIYKYIT ANVPIPSNLL MPIRKALDSV GFSTFSAGAL
201: RPNTLGWGSF HLGFSNNTDP EPGRCRRTDG KKWRCSRDAV ADQKYCERHM NRGRHRSRKP VEGQTGHSVP GPTTTATKLM PITSSSSASV VPGGGTSNSL
301: AIAHHQIKNL HPGASNPSAA TPINRIFLNK ENVGERMQET QGLSILSSTI DQKSKENQFS LPKQQIPYEE SSRAGFGLVP SNSLLSKSSS FMNCRNFGSS
401: QDLNNHEPDS QHSLRHFIDD WPKNQSDRTA ISWPDIDLQS DRTQLSISIP MASSDFMSST SSPTNDKLTL SPLRLSREFD PIQMGLGVGS VLNEPNQRQA
501: NWIPISWETS MGGPLGEVLH STNNNGGDCK NSSALNLMTE GWDGSPRLGS SPTGVLQKTS FGSLSNSSAG SSPRAGNKKT NDGASLCNDL LGSTLVNSSS
601: LPSL

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.