Factsheet for VIT_02s0025g04910.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20170_001	Banana	extracellular	40.19	49.12
GSMUA_Achr8P12060_001	Banana	extracellular	39.71	41.09
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	39.23	40.0
TraesCS6B01G267500.1	Wheat	nucleus	36.84	36.49
TraesCS6A01G257600.1	Wheat	nucleus	36.36	35.85
Zm00001d051456_P001	Maize	nucleus	37.8	35.75
Os02t0678800-01	Rice	nucleus	34.93	34.6
TraesCS6D01G238900.1	Wheat	nucleus	35.41	34.42
TraesCS2A01G398300.2	Wheat	nucleus	36.84	34.22
HORVU6Hr1G065740.4	Barley	nucleus	34.45	33.8
TraesCS2B01G416300.1	Wheat	nucleus	36.36	33.48
TraesCS2D01G395900.1	Wheat	nucleus	36.36	33.19
VIT_02s0025g02680.t01	Wine grape	nucleus	27.27	31.84
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	35.89	31.78
HORVU2Hr1G094460.2	Barley	mitochondrion, plasma membrane	33.97	31.7
PGSC0003DMT400009997	Potato	nucleus	17.7	30.33
Solyc08g079800.2.1	Tomato	nucleus	30.62	29.36
HORVU2Hr1G094470.2	Barley	nucleus	35.41	29.25
VIT_16s0039g01450.t01	Wine grape	nucleus	38.76	25.47
VIT_09s0002g01350.t01	Wine grape	nucleus	36.84	21.21
VIT_11s0016g01250.t01	Wine grape	nucleus	36.84	19.9
VIT_08s0007g03760.t01	Wine grape	nucleus	33.49	16.91
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	31.1	16.17
VIT_18s0001g08650.t01	Wine grape	nucleus	39.71	13.74
VIT_00s0494g00010.t01	Wine grape	nucleus	38.76	13.57
VIT_16s0098g01080.t01	Wine grape	nucleus	34.93	12.67

Protein Annotations

EntrezGene:100261588	wikigene:100261588	MapMan:15.5.52.1	ProteinID:CCB58431	ProteinID:CCB58431.1	UniProt:F6HUK8
EMBL:FN596251	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EntrezGene:LOC100261588	wikigene:LOC100261588	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF3	SMART:SM00951
TIGR:TC58558	UniParc:UPI0002108BA8	ArrayExpress:VIT_02s0025g04910	EnsemblPlantsGene:VIT_02s0025g04910	EnsemblPlants:VIT_02s0025g04910.t01	unigene:Vvi.19632
unigene:Vvi.5482	InterPro:WRC_dom	RefSeq:XP_002281639	RefSeq:XP_002281639.1	:	:

Description

No Description!

Coordinates

chr2:+:4421526..4422809

Molecular Weight (calculated)

22923.4 Da

IEP (calculated)

9.403

GRAVY (calculated)

-0.493

Length

209 amino acids

Sequence
(BLAST)

001: MDSHNPPSKI ARLSGSPPIG LGLELGRGSG DMLGCTKSCG FTFLQLQELE HQALIYKYME AGLPVPYHLV YPIWKSVACS LVGLTAGAYQ HHPGFLGLSP
101: LYLDYKNSMD PEPGRCRRTD GKKWRCSKEA VPDQKYCERH MHRGRQRSRK HVEASQLGAR TATSALNNTV RDAVTSNTNL SISLPVSSTT NDISPKSVLQ
201: LGAQKTEPS

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.