Factsheet for VIT_15s0048g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g04910.t01	Wine grape	nucleus	16.17	31.1
VIT_02s0025g02680.t01	Wine grape	nucleus	12.94	29.05
VIT_16s0039g01450.t01	Wine grape	nucleus	21.39	27.04
VIT_09s0002g01350.t01	Wine grape	nucleus	17.91	19.83
VIT_11s0016g01250.t01	Wine grape	nucleus	18.66	19.38
PGSC0003DMT400033246	Potato	nucleus	18.66	17.86
Solyc01g091540.1.1	Tomato	nucleus	18.66	17.86
VIT_08s0007g03760.t01	Wine grape	nucleus	17.16	16.67
VIT_18s0001g08650.t01	Wine grape	nucleus	21.39	14.24
VIT_00s0494g00010.t01	Wine grape	nucleus	19.15	12.9
VIT_16s0098g01080.t01	Wine grape	nucleus	15.67	10.94

Protein Annotations

EntrezGene:100242152	wikigene:100242152	MapMan:15.5.52.1	ProteinID:CBI38790	ProteinID:CBI38790.3	UniProt:D7U7L1
EMBL:FN596739	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EntrezGene:LOC100242152	wikigene:LOC100242152	PFAM:PF08879
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF3	TIGR:TC58835	TIGR:TC69391
UniParc:UPI0001984EB1	ArrayExpress:VIT_15s0048g01740	EnsemblPlantsGene:VIT_15s0048g01740	EnsemblPlants:VIT_15s0048g01740.t01	unigene:Vvi.3212	InterPro:WRC_dom
RefSeq:XP_002274750	RefSeq:XP_002274750.1	RefSeq:XP_019081163.1	RefSeq:XP_019081164.1	SEG:seg	:

Description

No Description!

Coordinates

chr15:-:15941212..15945130

Molecular Weight (calculated)

44127.1 Da

IEP (calculated)

9.971

GRAVY (calculated)

-0.869

Length

402 amino acids

Sequence
(BLAST)

001: MVAGLPVPVH LVLPIWKSVA SSFGSTDGGI YKQYPSFIGF SPQGFDYRNV MDPEPGRCRR TDGKKWRCSK DVVPDQKYCE RHMHRGRQRS RKPVEAPAIA
101: SHVTRPTFNS SMESENSKTD LTIAVPLSLQ LMAPSSNNTS TGNNTATTTT TTNNNNNQRE TNFSGNKQTS ATTAAAISDK ERNYFNGNKN FNTTSLALAA
201: ITKNESSDNA NDSKDFTTIM NMAVSTTSNN NSKRKRTDNM DEENGRNRAS DNINRSRNNG NDNNVGSNVS PGLDFSPKSV LQVMGCSSSC FDYRNYAEPE
301: PGRCRRTDGK KWRCSRDVVP DQKYCVRHMH RGAKKHVGVS QSVAVSAAIH SNCRPPTIPN KTRISINLNT NLSISIPANP QTISHDGESP TASSSSETTI
401: TN

Best Arabidopsis Sequence Match ( AT2G45480.3 )
(BLAST)

001: MKMQSPKMEQ EEVEEERMRN KWPWMKAAQL MEFRMQALVY RYIEAGLRVP HHLVVPIWNS LALSSSSNYN YHSSSLLSNK GVTHIDTLET EPTRCRRTDG
101: KKWRCSNTVL LFEKYCERHM HRGRKRSRKL VESSSEVASS STKYDNTYGL DRYNESQSHL HGTISGSSNA QVVTIASLPS ARSCENVIRP SLVISEFTNK
201: SVSHGRKNME MSYDDFINEK EASMCVGVVP LQGDESKPSV QKFFPEVSDK CLEAAKFSSN RKNDIIARSR EWKNMNVNGG LFHGIHFSPD TVLQERGCFR
301: LQGVETDNEP GRCRRTDGKK WRCSKDVLSG QKYCDKHMHR GMKKKHPVDT TNSHENAGFS PLTVETAVRS VVPCKDGDDQ KHSVSVMGIT LPRVSDEKST
401: SSCSTDTTIT DTALRGEDDD EEYLSLFSPG V

Arabidopsis Description

GRF9Growth-regulating factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.