Factsheet for Solyc01g091540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033246	Potato	nucleus	95.24	95.24
Solyc08g068760.1.1	Tomato	cytosol	10.71	29.03
Solyc08g079800.2.1	Tomato	nucleus	14.76	28.44
Solyc08g005430.2.1	Tomato	nucleus	21.67	25.56
Solyc12g096070.1.1	Tomato	nucleus	20.71	25.22
Solyc08g075950.1.1	Tomato	nucleus	21.43	24.93
Solyc07g041640.2.1	Tomato	nucleus	19.76	24.13
Solyc09g009200.1.1	Tomato	nucleus	21.67	23.88
Solyc10g083510.1.1	Tomato	nucleus	21.67	23.39
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	17.86	18.66
Solyc04g077510.2.1	Tomato	nucleus	24.05	16.97
Solyc03g082430.1.1	Tomato	nucleus	18.1	16.59
Solyc08g083230.1.1	Tomato	nucleus	15.71	16.58
Solyc02g092070.2.1	Tomato	nucleus	21.67	16.02

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K4AZ94	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF2	SMART:SM00951	EnsemblPlantsGene:Solyc01g091540.1
EnsemblPlants:Solyc01g091540.1.1	UniParc:UPI00027681F2	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:85156603..85159398

Molecular Weight (calculated)

46584.6 Da

IEP (calculated)

9.313

GRAVY (calculated)

-0.759

Length

420 amino acids

Sequence
(BLAST)

001: MQLHLFSATP LSLSGKGKED EIKKKKGSPP CIELSLGYGS SSHVVEEDGK DDKSSNSVFT EAQFQELQLQ AVIFKYLVSG LPVPFHLFFI IWNSVSSSLG
101: DGGIYKLYPT LGRFDYTSMT DPEPGRCRRT DGKKWRCKRD VIPGQKYCGQ HVHRGRRSRK PVEASEHVMR SDDTNIISKI TKLYASGDDP GSKCAPASSK
201: TSCLSSTSRT NQYNSIEDSS AKPRFINSGY GSEKQDTYMI CKRKDITTSV RTPSFIAGDN ADSKNIDFNR ISPSKTNQKQ NCGEARKHGA LVPILGLSTK
301: SDQQHTIGSE SDEQRCRRSD GKKWRCSKTV VPCQKYCETH MHRGANRKRV ASVSVVVPPS KSPSYRFCPP ENDGTRRNLN TSLSIYTIPG HQNITDDDSN
401: SNSISDATTI TDEIPAFVSH

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.