Factsheet for Solyc12g096070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075563	Potato	nucleus	96.23	94.86
Solyc08g075950.1.1	Tomato	nucleus	75.94	72.58
Solyc08g005430.2.1	Tomato	nucleus	70.43	68.26
VIT_16s0039g01450.t01	Wine grape	nucleus	53.33	57.86
KRH27682	Soybean	nucleus	46.96	52.6
GSMUA_Achr10P...	Banana	nucleus	50.72	51.93
KRH77798	Soybean	nucleus	46.96	50.94
KRH23984	Soybean	nucleus	47.25	48.95
GSMUA_Achr1P23840_001	Banana	nucleus	50.72	48.75
KRH29333	Soybean	nucleus	48.12	48.68
GSMUA_AchrUn_...	Banana	nucleus	49.57	41.61
GSMUA_Achr2P04650_001	Banana	extracellular	51.88	41.53
Solyc07g041640.2.1	Tomato	nucleus	36.52	36.63
Solyc08g068760.1.1	Tomato	cytosol	14.2	31.61
Solyc08g079800.2.1	Tomato	nucleus	17.1	27.06
Solyc01g091540.1.1	Tomato	nucleus	25.22	20.71
Solyc10g083510.1.1	Tomato	nucleus	22.61	20.05
Solyc09g009200.1.1	Tomato	nucleus	22.03	19.95
Solyc03g082430.1.1	Tomato	nucleus	24.93	18.78
Solyc04g077510.2.1	Tomato	nucleus	32.17	18.66
Solyc02g092070.2.1	Tomato	nucleus	29.57	17.96
Solyc08g083230.1.1	Tomato	nucleus	17.68	15.33

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K4DH80	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF8	SMART:SM00951	EnsemblPlantsGene:Solyc12g096070.1
EnsemblPlants:Solyc12g096070.1.1	UniParc:UPI0002769B9A	InterPro:WRC_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:65145892..65149330

Molecular Weight (calculated)

38592.7 Da

IEP (calculated)

7.549

GRAVY (calculated)

-0.867

Length

345 amino acids

Sequence
(BLAST)

001: MAAENGYRPP FTAVQWQELE HQAMIYKYLV AGIPVPADLV VPIRRSFEPI SARFFHHPSL GYCSYYGKKF DPEPGRCRRT DGKKWRCAKD AYPDSKYCER
101: HMHRGRNRSR KHVESQSTAQ SLLTSMSHNT TGSTTGSSKT SGNFQRNSSE SFQNTPLYSA ANSEGPSYGS ATTKMQMEPP TYAIDSKGYF HGMTADADEQ
201: NFSLEASEGT RSLGMGSNTD SMWCLMPPQL PSSPMVKPKN DSQLLDSSRQ IRMPNPFEPM NDTTISGQHQ HCFFSSDIGS PGTVKQEQRS MRPFFDEWPT
301: TKESWSNLDD EGSNKNNFST TQLSISIPMA PPDFSSRSSC SPNDA

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.