Factsheet for GSMUA_Achr1P23840_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	83.29	72.75
GSMUA_Achr10P...	Banana	nucleus	65.46	69.73
VIT_16s0039g01450.t01	Wine grape	nucleus	55.43	62.58
GSMUA_Achr2P04650_001	Banana	extracellular	69.36	57.77
KRH27682	Soybean	nucleus	45.13	52.6
KRH23984	Soybean	nucleus	48.19	51.95
KRH77798	Soybean	nucleus	45.96	51.89
PGSC0003DMT400079338	Potato	nucleus	45.4	51.26
KRH29333	Soybean	nucleus	48.47	51.03
Solyc12g096070.1.1	Tomato	nucleus	48.75	50.72
PGSC0003DMT400075563	Potato	nucleus	48.47	49.71
GSMUA_Achr6P01270_001	Banana	nucleus	46.24	49.4
Solyc08g075950.1.1	Tomato	nucleus	49.58	49.31
PGSC0003DMT400047580	Potato	nucleus	47.63	48.44
Solyc08g005430.2.1	Tomato	nucleus	47.08	47.47
GSMUA_Achr5P20170_001	Banana	extracellular	20.33	42.69
GSMUA_Achr8P12060_001	Banana	extracellular	20.89	37.13
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	20.89	36.59
GSMUA_Achr4P32310_001	Banana	nucleus	13.93	34.48
GSMUA_Achr8P30640_001	Banana	nucleus	29.25	32.81
GSMUA_Achr1P21940_001	Banana	nucleus	31.75	30.08
GSMUA_Achr7P02330_001	Banana	nucleus	28.41	29.65
GSMUA_Achr8P07650_001	Banana	extracellular	22.56	25.63
GSMUA_Achr3P22790_001	Banana	nucleus	26.74	24.49
GSMUA_Achr1P27000_001	Banana	nucleus	26.18	22.17
GSMUA_AchrUn_...	Banana	nucleus	18.94	19.94
GSMUA_Achr8P04970_001	Banana	nucleus	30.92	19.11
GSMUA_Achr3P15140_001	Banana	nucleus	24.23	17.83
GSMUA_Achr7P27480_001	Banana	nucleus	30.08	17.79
GSMUA_Achr8P26530_001	Banana	nucleus	30.64	7.67

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
EnsemblPlantsGene:GSMUA_Achr1G23840_001	EnsemblPlants:GSMUA_Achr1P23840_001	EnsemblPlants:GSMUA_Achr1T23840_001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M0S2J1	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF8	SMART:SM00951	UniParc:UPI000296F2EE	InterPro:WRC_dom	SEG:seg	:

Description

growth-regulating factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G23840_001]

Coordinates

chr1:+:18256718..18261135

Molecular Weight (calculated)

39286.6 Da

IEP (calculated)

9.564

GRAVY (calculated)

-0.676

Length

359 amino acids

Sequence
(BLAST)

001: MNSFAAAAAA VGCRPPFTAT QWQELEHQAL ILKYLMAGVP VPPELIIPIR RSFEALPGRY YHPSRKRPTP SYLSYYSYYG KKPDPEPGRC RRTDGKKWRC
101: SKDAYPGSKY CERHMHRGRN RSRKPVESQT VSPSQTSSST LTSLSPSGSN AGGTGVGSLR SITLQSIAGP SNAQNSCLGG GASSSRLPMD TDSLGNRYSS
201: GLKPDVDERS FFSEASGTAR ALGVDSSVDS SWLLMPPQAS SFPMSKSQDL SILHSAYSQL QTVQDLGRAK MSSLSRQEQQ QHSFFGSEFG SSEPVKHETQ
301: FLRPFFDEWP KTRDAWSDLE EDRSNRTSFS TTQLSISIPM AASDFSSTSS RSPNGGSLS

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.