Factsheet for GSMUA_Achr8P30640_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21940_001	Banana	nucleus	65.31	55.15
GSMUA_Achr5P20170_001	Banana	extracellular	20.62	38.6
VIT_09s0002g01350.t01	Wine grape	nucleus	42.81	37.74
KRH47599	Soybean	nucleus	39.38	36.52
Os06t0204800-00	Rice	nucleus	33.12	35.22
KRH06183	Soybean	nucleus	39.06	34.72
GSMUA_Achr11P...	Banana	mitochondrion, plasma membrane	21.88	34.15
GSMUA_Achr7P02330_001	Banana	nucleus	36.56	34.01
VIT_11s0016g01250.t01	Wine grape	nucleus	40.31	33.33
HORVU7Hr1G034610.4	Barley	mitochondrion	32.19	32.91
KRH12524	Soybean	nucleus	37.5	32.88
OQU76020	Sorghum	mitochondrion, nucleus	34.69	32.84
KRH37478	Soybean	nucleus	37.19	32.6
TraesCS7B01G070200.1	Wheat	nucleus	32.19	32.59
Solyc07g041640.2.1	Tomato	nucleus	35.0	32.56
TraesCS7A01G165600.1	Wheat	nucleus	31.25	32.36
KRH02627	Soybean	nucleus	38.12	32.36
KRH19281	Soybean	nucleus	38.75	32.29
TraesCS7D01G166400.1	Wheat	nucleus	32.19	32.19
GSMUA_Achr8P12060_001	Banana	extracellular	20.31	32.18
CDY70432	Canola	nucleus	24.38	32.1
GSMUA_Achr10P...	Banana	nucleus	33.44	31.75
Os02t0776900-01	Rice	mitochondrion, nucleus	39.06	31.49
AT2G06200.2	Thale cress	endoplasmic reticulum, plasma membrane	27.81	31.45
Zm00001d018260_P001	Maize	mitochondrion	36.56	31.12
GSMUA_Achr4P32310_001	Banana	nucleus	14.06	31.03
KXG31209	Sorghum	mitochondrion, nucleus	37.81	30.56
Zm00001d037117_P001	Maize	mitochondrion, nucleus	34.06	29.62
GSMUA_Achr1P23840_001	Banana	nucleus	32.81	29.25
GSMUA_Achr6P01270_001	Banana	nucleus	30.62	29.17
HORVU6Hr1G081210.1	Barley	nucleus	37.19	28.81
Zm00001d052112_P001	Maize	mitochondrion, nucleus	35.94	28.68
Zm00001d000238_P001	Maize	nucleus	35.0	28.57
TraesCS6A01G335900.1	Wheat	nucleus	36.25	28.36
TraesCS6B01G366700.1	Wheat	nucleus	36.25	28.29
TraesCS6D01G315700.1	Wheat	nucleus	36.56	28.26
PGSC0003DMT400033847	Potato	nucleus	23.75	28.15
GSMUA_AchrUn_...	Banana	nucleus	34.69	27.01
GSMUA_Achr2P04650_001	Banana	extracellular	33.12	24.59
GSMUA_Achr8P07650_001	Banana	extracellular	22.19	22.47
Bra015184.1-P	Field mustard	nucleus	27.5	22.0
CDY33407	Canola	nucleus	27.5	22.0
GSMUA_Achr3P22790_001	Banana	nucleus	26.56	21.68
GSMUA_Achr1P27000_001	Banana	nucleus	26.88	20.28
GSMUA_AchrUn_...	Banana	nucleus	21.25	19.94
GSMUA_Achr3P15140_001	Banana	nucleus	26.25	17.21
GSMUA_Achr8P04970_001	Banana	nucleus	29.38	16.18
GSMUA_Achr7P27480_001	Banana	nucleus	26.56	14.0
GSMUA_Achr8P26530_001	Banana	nucleus	27.81	6.21

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
EnsemblPlantsGene:GSMUA_Achr8G30640_001	EnsemblPlants:GSMUA_Achr8P30640_001	EnsemblPlants:GSMUA_Achr8T30640_001	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:M0TV16	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF23	SMART:SM00951	UniParc:UPI000294B6D0	InterPro:WRC_dom	SEG:seg	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G30640_001]

Coordinates

chr8:+:32613653..32615939

Molecular Weight (calculated)

35579.3 Da

IEP (calculated)

8.010

GRAVY (calculated)

-0.610

Length

320 amino acids

Sequence
(BLAST)

001: MMMGGGSRYP FTASQWQELE LQALVFKYMV SGIPVPSDLI LCIRRSLFMD PQALPFIPNP PTIGWGAYQL GDGRKPVDPE PGRCRRTDGK KWRCSKEAYP
101: DSKYCERHMH RGKSRSRKPV ELSLATNPTS SQFSSSNFVA AAAAAAAAAP PPPPPPPLSL STPQTHHFLL PCPSSSRPPA MGFSLKDDSA SFCLDSSPYT
201: VDNYRLGSMD MSSVEETKQS FGYMQGAHPH SRICLSEEQD KEKHYFVLGA DLKTDKSAKL ERAEQPQNAR PFHCFLDEKP QKMEDSWMSM DADLKMQLSI
301: SIPMANHDKP VAASQRYNDG

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.