Factsheet for Zm00001d052112_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033905_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	Zm00001d033905_P001	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31209	Sorghum	mitochondrion, nucleus	83.54	84.6
Zm00001d018260_P001	Maize	mitochondrion	72.07	76.86
Os02t0776900-01	Rice	mitochondrion, nucleus	68.08	68.77
TraesCS6A01G335900.1	Wheat	nucleus	65.34	64.06
HORVU6Hr1G081210.1	Barley	nucleus	65.84	63.92
TraesCS6B01G366700.1	Wheat	nucleus	65.09	63.66
TraesCS6D01G315700.1	Wheat	nucleus	65.59	63.53
Zm00001d005387_P001	Maize	nucleus	8.48	54.84
Zm00001d042010_P001	Maize	nucleus	8.73	50.72
Zm00001d037117_P001	Maize	mitochondrion, nucleus	37.91	41.3
VIT_09s0002g01350.t01	Wine grape	nucleus	36.16	39.94
Zm00001d000238_P001	Maize	nucleus	38.15	39.03
Zm00001d014421_P001	Maize	cytosol	9.23	37.76
KRH12524	Soybean	nucleus	33.92	37.26
KRH37478	Soybean	nucleus	33.42	36.71
GSMUA_Achr8P30640_001	Banana	nucleus	28.68	35.94
Solyc07g041640.2.1	Tomato	nucleus	30.67	35.76
VIT_11s0016g01250.t01	Wine grape	nucleus	34.41	35.66
KRH47599	Soybean	nucleus	30.67	35.65
KRH02627	Soybean	nucleus	32.67	34.75
KRH06183	Soybean	nucleus	30.92	34.44
Zm00001d002429_P003	Maize	nucleus	30.67	34.26
KRH19281	Soybean	nucleus	32.67	34.11
GSMUA_Achr7P02330_001	Banana	nucleus	27.43	31.98
PGSC0003DMT400033847	Potato	nucleus	21.45	31.85
CDX71979	Canola	nucleus	30.42	31.69
GSMUA_Achr1P21940_001	Banana	nucleus	29.68	31.4
CDY39081	Canola	nucleus	30.92	31.16
Zm00001d045533_P001	Maize	nucleus	28.43	31.15
Bra001532.1-P	Field mustard	nucleus	27.93	30.85
AT3G13960.1	Thale cress	nucleus	29.93	30.23
Zm00001d026240_P006	Maize	plastid	29.93	30.23
CDX82503	Canola	nucleus	27.43	30.05
Zm00001d035965_P004	Maize	nucleus	28.43	29.92
Zm00001d017742_P001	Maize	plastid	30.42	29.9
CDX97531	Canola	nucleus	28.93	29.9
CDY55209	Canola	nucleus	28.93	29.74
CDX75742	Canola	nucleus	26.93	29.59
Bra027384.1-P	Field mustard	nucleus	28.43	29.16
Zm00001d051456_P001	Maize	nucleus	14.71	26.7
Bra021521.1-P	Field mustard	cytosol	26.43	25.79
Zm00001d007465_P001	Maize	nucleus	17.71	22.76
Zm00001d006338_P002	Maize	mitochondrion	15.71	22.66
Zm00001d006348_P001	Maize	nucleus	13.72	20.15
Zm00001d021362_P001	Maize	extracellular, nucleus	13.22	19.7
Zm00001d033396_P003	Maize	nucleus	19.7	18.04
Zm00001d013555_P001	Maize	nucleus	18.7	17.2
Zm00001d033876_P004	Maize	nucleus	24.44	16.53
Zm00001d013346_P001	Maize	nucleus	23.44	16.07
Zm00001d002049_P001	Maize	cytosol, plastid	2.24	9.18

Protein Annotations

EntrezGene:100101536	MapMan:15.5.52.1	ProteinID:AQK56260.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:K7U1V3
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF23
SMART:SM00951	UniParc:UPI0002213170	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d052112	EnsemblPlants:Zm00001d052112_P001	EnsemblPlants:Zm00001d052112_T001
SEG:seg	:	:	:	:	:

Description

GRF-transcription factor 10Growth-regulating factor 6

Coordinates

chr4:+:180147356..180150053

Molecular Weight (calculated)

43205.3 Da

IEP (calculated)

7.979

GRAVY (calculated)

-0.772

Length

401 amino acids

Sequence
(BLAST)

001: MMMMSSGRAG GGATAGRYPF TASQWQELEH QALIYKCLAS GKPIPSYLMP PLRRILDSAL ATSPSLAYPP QPSLGWGCFG MGFTRKADED PEPGRCRRTD
101: GKKWRCSKEA YPDSKYCEKH MHRGKNRSRK PVEMSLATPA PAPAPAAATT ATATSSPAPS YHRPAHDATP SPYHALYGGG GGGGGSPYSA SARPGATGGG
201: GAYHHAQHVS PFHLHLETTH PHPPPPYNYS ADQRDYAYGH AAAKEVGEHA FFSDGAGERV DRQAAAGQWQ FRQLGVETKP GPTPLFPVAG YGHGAASPYG
301: VEMGKDDDEQ EERRRQHCFV LGADLRLERP SSGHGHGHDH DDAAAAQKPL RPFFDEWPHQ KGDKAGSWMG LDGETQLSMS IPMAATDLPV TSRFRNGGHY
401: E

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.