Factsheet for Zm00001d013346_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033905_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	Zm00001d033905_P001	AT5G28640.1	15326298
AT4G37740.1	Zm00001d033905_P001	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90936	Sorghum	nucleus	79.32	77.2
Zm00001d033876_P004	Maize	nucleus	77.95	76.9
Os03t0729500-01	Rice	nucleus	58.97	75.66
TraesCS4D01G059600.1	Wheat	nucleus	65.3	66.09
TraesCS4A01G255000.1	Wheat	nucleus	66.84	64.42
HORVU4Hr1G010080.2	Barley	nucleus	66.15	63.55
TraesCS4B01G060000.1	Wheat	nucleus	66.15	63.34
Zm00001d007465_P001	Maize	nucleus	24.44	45.83
Zm00001d005387_P001	Maize	nucleus	4.79	45.16
Zm00001d042010_P001	Maize	nucleus	5.3	44.93
CDY55116	Canola	nucleus	21.54	44.68
GSMUA_Achr3P15140_001	Banana	nucleus	37.09	44.47
GSMUA_Achr7P27480_001	Banana	nucleus	45.13	43.49
GSMUA_Achr8P04970_001	Banana	nucleus	41.54	41.82
CDY66422	Canola	nucleus	21.88	40.89
GSMUA_Achr1P27000_001	Banana	nucleus	29.57	40.8
CDX83200	Canola	nucleus	26.84	39.85
Zm00001d006338_P002	Maize	mitochondrion	17.78	37.41
GSMUA_AchrUn_...	Banana	nucleus	20.85	35.78
CDX72654	Canola	nucleus	26.5	35.07
CDY29584	Canola	nucleus	24.44	35.05
Bra000575.1-P	Field mustard	nucleus	30.77	34.75
CDX69322	Canola	nucleus	27.18	34.49
Bra017851.1-P	Field mustard	nucleus	26.32	34.45
Zm00001d051456_P001	Maize	nucleus	12.82	33.94
CDX75672	Canola	nucleus	26.15	33.92
AT2G22840.1	Thale cress	nucleus	30.6	33.77
Bra011781.1-P	Field mustard	nucleus	25.98	33.7
AT4G37740.1	Thale cress	nucleus	29.06	31.78
Zm00001d014421_P001	Maize	cytosol	5.3	31.63
Zm00001d017742_P001	Maize	plastid	19.15	27.45
Zm00001d033396_P003	Maize	nucleus	20.51	27.4
Zm00001d002429_P003	Maize	nucleus	16.75	27.3
Zm00001d035965_P004	Maize	nucleus	17.27	26.51
Zm00001d045533_P001	Maize	nucleus	16.58	26.5
CDY21475	Canola	nucleus	22.22	26.16
Zm00001d013555_P001	Maize	nucleus	19.15	25.69
Zm00001d002049_P001	Maize	cytosol, plastid	4.27	25.51
Zm00001d026240_P006	Maize	plastid	17.27	25.44
Zm00001d000238_P001	Maize	nucleus	16.75	25.0
Zm00001d018260_P001	Maize	mitochondrion	15.9	24.73
Zm00001d037117_P001	Maize	mitochondrion, nucleus	15.21	24.18
Zm00001d052112_P001	Maize	mitochondrion, nucleus	16.07	23.44
Zm00001d021362_P001	Maize	extracellular, nucleus	10.26	22.3
Zm00001d006348_P001	Maize	nucleus	10.09	21.61
GSMUA_Achr8P26530_001	Banana	nucleus	43.76	17.85

Protein Annotations

MapMan:15.5.52.1	UniProt:A0A1D6GI93	ProteinID:AQK63157.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879
PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF40	SMART:SM00951
UniParc:UPI0008449C3C	InterPro:WRC_dom	EnsemblPlantsGene:Zm00001d013346	EnsemblPlants:Zm00001d013346_P001	EnsemblPlants:Zm00001d013346_T001	SEG:seg

Description

GRF-transcription factor 14Growth-regulating factor 2

Coordinates

chr5:-:9051468..9063110

Molecular Weight (calculated)

60898.0 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.366

Length

585 amino acids

Sequence
(BLAST)

001: MEAGGGASEL GLLGAGSGRL LKHGRGDAAG GEDHGWVVVV GGGGRAKQAR TASVGTGDAA ATAAVPFLLG SCGGPGHGGE RMLSFSSAAA AAPDDGGAMP
101: PLYYGTPASC SGLMSSARVR GPFTPPQWIE LEHQALIYKY LSANSPVPHS LLVPIRRSGS LASSPYPPPY FGTSTFGWGS FQLGYSGNAD LEPGRCRRTD
201: GKKWRCSRDA VADQKYCERH MNRGRHRSRK HVEDQPGHAA KAMSAVAVAA AAAAATQHAA ALAGAGATAA AGLAVNRHRQ PGKSYATGAT DPCSLQYSRE
301: LANKLSNESE NMQDSDNVSM LTSMNTGNTA GSVFPFSKQN TALFEVSSSR PEFGLVPSDS LTSSPHSSLK SVKNLLSSRS LSEHQSSASL QHFVDWPRTP
401: PAQGGLSWPE AEDMPRAQRS QLSVSAPMAS SELSSASTSP IHDHEKLILS PLKLGREYTP SGVVSAAANR YEVSQLEATW ATMFRDSSTG GPLGEVLAKN
501: NSNAEARGCP SAAPPLTDYY CWDSGHGMQS SPVGVLQRTT AFGSVSSSTG SSPRVENHGA CCDGTSNLMD DLGSVVVRHP SIRLL

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.