Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d033905_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22840.1 | Zm00001d033905_P001 | AT5G28640.1 | 15326298 |
| AT4G37740.1 | Zm00001d033905_P001 | AT5G28640.1 | 15326298 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006338_P002 | Maize | mitochondrion | 93.88 | 33.09 |
| CDX83200 | Canola | nucleus | 20.41 | 5.08 |
| CDY55116 | Canola | nucleus | 14.29 | 4.96 |
| VIT_18s0001g08650.t01 | Wine grape | nucleus | 28.57 | 4.64 |
| Solyc04g077510.2.1 | Tomato | nucleus | 27.55 | 4.54 |
| PGSC0003DMT400012666 | Potato | mitochondrion, nucleus | 27.55 | 4.52 |
| Zm00001d007465_P001 | Maize | nucleus | 14.29 | 4.49 |
| CDY66422 | Canola | nucleus | 14.29 | 4.47 |
| Zm00001d033876_P004 | Maize | nucleus | 26.53 | 4.38 |
| CDX72654 | Canola | nucleus | 19.39 | 4.3 |
| Zm00001d013346_P001 | Maize | nucleus | 25.51 | 4.27 |
| Bra017851.1-P | Field mustard | nucleus | 19.39 | 4.25 |
| KRG88739 | Soybean | nucleus | 25.51 | 4.21 |
| KRG88736 | Soybean | nucleus | 25.51 | 4.17 |
| KRH05542 | Soybean | nucleus | 25.51 | 4.17 |
| Bra011781.1-P | Field mustard | nucleus | 18.37 | 3.99 |
| KRH05543 | Soybean | nucleus | 24.49 | 3.94 |
| CDX69322 | Canola | nucleus | 18.37 | 3.9 |
| Bra000575.1-P | Field mustard | nucleus | 20.41 | 3.86 |
| CDX75672 | Canola | nucleus | 17.35 | 3.77 |
| AT2G22840.1 | Thale cress | nucleus | 19.39 | 3.58 |
| AT4G37740.1 | Thale cress | nucleus | 19.39 | 3.55 |
| Zm00001d017742_P001 | Maize | plastid | 14.29 | 3.43 |
| CDY29584 | Canola | nucleus | 14.29 | 3.43 |
| Zm00001d002429_P003 | Maize | nucleus | 12.24 | 3.34 |
| Zm00001d000238_P001 | Maize | nucleus | 13.27 | 3.32 |
| Zm00001d026240_P006 | Maize | plastid | 13.27 | 3.27 |
| Zm00001d045533_P001 | Maize | nucleus | 9.18 | 2.46 |
| Zm00001d037117_P001 | Maize | mitochondrion, nucleus | 9.18 | 2.45 |
| Zm00001d018260_P001 | Maize | mitochondrion | 9.18 | 2.39 |
| Zm00001d052112_P001 | Maize | mitochondrion, nucleus | 9.18 | 2.24 |
| Zm00001d013555_P001 | Maize | nucleus | 9.18 | 2.06 |
| Zm00001d021362_P001 | Maize | extracellular, nucleus | 5.1 | 1.86 |
| Zm00001d035965_P004 | Maize | nucleus | 7.14 | 1.84 |
| Zm00001d006348_P001 | Maize | nucleus | 5.1 | 1.83 |
| Zm00001d033396_P003 | Maize | nucleus | 8.16 | 1.83 |
| Zm00001d005387_P001 | Maize | nucleus | 1.02 | 1.61 |
| Zm00001d042010_P001 | Maize | nucleus | 1.02 | 1.45 |
| GSMUA_Achr4P32310_001 | Banana | nucleus | 2.04 | 1.38 |
| Zm00001d014421_P001 | Maize | cytosol | 1.02 | 1.02 |
| CDY21475 | Canola | nucleus | 5.1 | 1.01 |
| Zm00001d051456_P001 | Maize | nucleus | 1.02 | 0.45 |
Protein Annotations
| EnsemblPlants:Zm00001d002049_P001 | EnsemblPlants:Zm00001d002049_T001 | EnsemblPlantsGene:Zm00001d002049 | ProteinID:ONM12894.1 | SEG:seg | UniParc:UPI000844DDB7 |
| UniProt:A0A1D6DW05 | MapMan:35.2 | : | : | : | : |
Description
Growth-regulating factor 6
Coordinates
chr2:+:4956684..4958749
Molecular Weight (calculated)
10379.2 Da
IEP (calculated)
8.654
GRAVY (calculated)
-0.257
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MNSLELAKNC IYDVSSRGRA LARSTEDLAR ATGSVAASPS GSTSSTSSSP ESRATSPFPA LDSDPCRTFL HCYLQKGKEC RAGSNVVGIY LRLTTMTI
0001: MWLLSSSPWL SELSCSYSAV VEHTSSVPVP IQWLRFVLLS PCPQRALFSA VDFIFLLCFA LHKLFSSPSS SSEINGHAEI RKPLIGIRGR TPTRTTAWFK
0101: TTVAVTVLLS FCSVVLCVLA FTGKRRTQRP WNLIDPLFWL IHAVTHLVIA VLVLHQKRFA ALNHPLSLRI YWISSFVLTS LFAVTGIFHF LSDAATSLRA
0201: EDVASFFSFP LTAFLLIASV RGITGLVTAE TNSPTKPSDA VSVEKSDNVS LYASASVFSK TFWLWMNPLL SKGYKSPLTL EQVPTLSPEH KAERLALLFE
0301: SSWPKPSENS SHPIRTTLLR CFWKEILFTA ILAIVRLGVM YVGPVLIQSF VDFTSGKRSS PWQGYYLVLI LLVAKFVEVL TTHQFNFDSQ KLGMLIRSTL
0401: ITALYKKGLK LTGSARQNHG VGQIVNYMAV DAQQLSDMML QLHAIWLMPL QVTVALVLLY GSLGASVITA VIGLTGVFVF ILLGTQRNNG YQFSLMGNRD
0501: SRMKATNEML NYMRVIKFQA WENHFNKRIL KFRDMEFGWL SKFLYSIAGN IIVLWSTPVL ISALTFATAL ALGVKLDAGT VFTTTTIFKI LQEPIRTFPQ
0601: SMISLSQAMI SLGRLDSYMM SKELSEDAVE RALGCDGNTA VEVRDGSFSW DDEDNEPALS DINFKVKKGE LTAIVGTVGS GKSSLLASVL GEMHRISGQV
0701: RVCGSTGYVA QTSWIENGTV QDNILFGLPM VREKYNKVLN VCSLEKDLQM MEFGDKTEIG ERGINLSGGQ KQRIQLARAV YQECDVYLLD DVFSAVDAHT
0801: GSDIFKKCVR GALKGKTVLL VTHQVDFLHN VDCILVMRDG KIVESGKYDE LVSSGLDFGE LVAAHETSME LVEAGADSAA VATSPRTPTS PHASSPRTSM
0901: ESPHLSDLND EHIKSFLGSH IVEDGSKLIK EEERETGQVS LGVYKQYCTE AYGWWGIVLV LFFSLTWQGS LMASDYWLAY ETSAKNAISF DASVFILGYV
1001: IIALVSIVLV SIRSYYVTHL GLKTAQIFFR QILNSILHAP MSFFDTTPSG RILSRASTDQ TNVDILIPFM LGLVVSMYTT LLSIFIVTCQ YAWPTAFFVI
1101: PLGWLNIWYR NYYLASSREL TRMDSITKAP IIHHFSESIA GVMTIRSFRK QELFRQENVK RVNDNLRMDF HNNGSNEWLG FRLELVGSWV LCISALFMVL
1201: LPSNVIRPEN VGLSLSYGLS LNSVLFFAIY MSCFVENKMV SVERIKQFTD IPSESEWERK ETLPPSNWPF HGNVHLEDLK VRYRPNTPLV LKGITLDIKG
1301: GEKVGVVGRT GSGKSTLIQV LFRLVEPSGG KIIIDGIDIS TLGLHDLRSR FGIIPQEPVL FEGTVRSNID PTEQYSDEEI WKSLERCQLK DVVATKPEKL
1401: DSLVVDNGEN WSVGQRQLLC LGRVMLKRSR LLFLDEATAS VDSQTDAVIQ KIIREDFASC TIISIAHRIP TVMDGDRVLV IDAGKAKEFD SPARLLERPS
1501: LFAALVQEYA LRSAGI
0101: TTVAVTVLLS FCSVVLCVLA FTGKRRTQRP WNLIDPLFWL IHAVTHLVIA VLVLHQKRFA ALNHPLSLRI YWISSFVLTS LFAVTGIFHF LSDAATSLRA
0201: EDVASFFSFP LTAFLLIASV RGITGLVTAE TNSPTKPSDA VSVEKSDNVS LYASASVFSK TFWLWMNPLL SKGYKSPLTL EQVPTLSPEH KAERLALLFE
0301: SSWPKPSENS SHPIRTTLLR CFWKEILFTA ILAIVRLGVM YVGPVLIQSF VDFTSGKRSS PWQGYYLVLI LLVAKFVEVL TTHQFNFDSQ KLGMLIRSTL
0401: ITALYKKGLK LTGSARQNHG VGQIVNYMAV DAQQLSDMML QLHAIWLMPL QVTVALVLLY GSLGASVITA VIGLTGVFVF ILLGTQRNNG YQFSLMGNRD
0501: SRMKATNEML NYMRVIKFQA WENHFNKRIL KFRDMEFGWL SKFLYSIAGN IIVLWSTPVL ISALTFATAL ALGVKLDAGT VFTTTTIFKI LQEPIRTFPQ
0601: SMISLSQAMI SLGRLDSYMM SKELSEDAVE RALGCDGNTA VEVRDGSFSW DDEDNEPALS DINFKVKKGE LTAIVGTVGS GKSSLLASVL GEMHRISGQV
0701: RVCGSTGYVA QTSWIENGTV QDNILFGLPM VREKYNKVLN VCSLEKDLQM MEFGDKTEIG ERGINLSGGQ KQRIQLARAV YQECDVYLLD DVFSAVDAHT
0801: GSDIFKKCVR GALKGKTVLL VTHQVDFLHN VDCILVMRDG KIVESGKYDE LVSSGLDFGE LVAAHETSME LVEAGADSAA VATSPRTPTS PHASSPRTSM
0901: ESPHLSDLND EHIKSFLGSH IVEDGSKLIK EEERETGQVS LGVYKQYCTE AYGWWGIVLV LFFSLTWQGS LMASDYWLAY ETSAKNAISF DASVFILGYV
1001: IIALVSIVLV SIRSYYVTHL GLKTAQIFFR QILNSILHAP MSFFDTTPSG RILSRASTDQ TNVDILIPFM LGLVVSMYTT LLSIFIVTCQ YAWPTAFFVI
1101: PLGWLNIWYR NYYLASSREL TRMDSITKAP IIHHFSESIA GVMTIRSFRK QELFRQENVK RVNDNLRMDF HNNGSNEWLG FRLELVGSWV LCISALFMVL
1201: LPSNVIRPEN VGLSLSYGLS LNSVLFFAIY MSCFVENKMV SVERIKQFTD IPSESEWERK ETLPPSNWPF HGNVHLEDLK VRYRPNTPLV LKGITLDIKG
1301: GEKVGVVGRT GSGKSTLIQV LFRLVEPSGG KIIIDGIDIS TLGLHDLRSR FGIIPQEPVL FEGTVRSNID PTEQYSDEEI WKSLERCQLK DVVATKPEKL
1401: DSLVVDNGEN WSVGQRQLLC LGRVMLKRSR LLFLDEATAS VDSQTDAVIQ KIIREDFASC TIISIAHRIP TVMDGDRVLV IDAGKAKEFD SPARLLERPS
1501: LFAALVQEYA LRSAGI
Arabidopsis Description
ABCC4ABC transporter C family member 4 [Source:UniProtKB/Swiss-Prot;Acc:Q7DM58]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.