CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92707
KRG97010
KRH34114
KRH68767

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	KRG92707	AT5G28640.1	15326298
AT2G22840.1	KRG97010	AT5G28640.1	15326298
AT2G22840.1	KRH34114	AT5G28640.1	15326298
AT2G22840.1	KRH68767	AT5G28640.1	15326298
AT4G37740.1	KRG92707	AT5G28640.1	15326298
AT4G37740.1	KRG97010	AT5G28640.1	15326298
AT4G37740.1	KRH34114	AT5G28640.1	15326298
AT4G37740.1	KRH68767	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05543	Soybean	nucleus	92.42	90.15
KRG88736	Soybean	nucleus	89.23	88.48
KRH05542	Soybean	nucleus	89.06	88.17
VIT_18s0001g08650.t01	Wine grape	nucleus	62.12	61.09
GSMUA_Achr4P32310_001	Banana	nucleus	13.97	57.24
CDY55116	Canola	nucleus	25.93	54.61
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	51.35	51.09
CDY66422	Canola	nucleus	26.77	50.8
Solyc04g077510.2.1	Tomato	nucleus	50.51	50.42
CDX83200	Canola	nucleus	33.0	49.75
Bra017851.1-P	Field mustard	nucleus	35.69	47.43
CDY29584	Canola	nucleus	32.49	47.3
Bra000575.1-P	Field mustard	nucleus	41.08	47.1
CDX72654	Canola	nucleus	35.02	47.06
CDX75672	Canola	nucleus	35.02	46.12
Bra011781.1-P	Field mustard	nucleus	34.85	45.9
AT2G22840.1	Thale cress	nucleus	40.24	45.09
CDX69322	Canola	nucleus	34.85	44.9
Os03t0729500-01	Rice	nucleus	34.01	44.3
Os12t0484900-01	Rice	nucleus, plastid	29.63	42.62
AT4G37740.1	Thale cress	nucleus	38.22	42.43
HORVU4Hr1G037480.5	Barley	nucleus	22.05	39.94
TraesCS4D01G059600.1	Wheat	nucleus	38.38	39.45
TraesCS4A01G255000.1	Wheat	nucleus	39.73	38.88
EER90936	Sorghum	nucleus	39.23	38.77
TraesCS4B01G060000.1	Wheat	nucleus	39.39	38.3
HORVU4Hr1G010080.2	Barley	nucleus	39.23	38.26
KXG28671	Sorghum	nucleus	23.4	37.47
KRH27682	Soybean	nucleus	18.52	35.71
CDY21475	Canola	nucleus	29.46	35.21
KRH30830	Soybean	nucleus	19.7	34.93
KRH32671	Soybean	nucleus	19.53	34.52
KRH77798	Soybean	nucleus	18.18	33.96
KRH67865	Soybean	nucleus	21.89	33.85
Zm00001d006338_P002	Maize	mitochondrion	15.82	33.81
KRG96154	Soybean	nucleus	22.05	33.76
KRH23984	Soybean	nucleus	18.86	33.63
KRH29333	Soybean	nucleus	18.86	32.84
HORVU4Hr1G003440.12	Barley	nucleus	20.54	29.9
EER93679	Sorghum	nucleus	21.72	29.66
TraesCS4A01G291500.1	Wheat	nucleus	20.2	29.41
Os03t0674700-01	Rice	nucleus	20.88	29.11
KRH12524	Soybean	nucleus	17.51	28.49
TraesCS4D01G020300.1	Wheat	nucleus	19.87	28.43
KRH37478	Soybean	nucleus	17.0	27.67
KRH02627	Soybean	nucleus	17.34	27.32
KRH76368	Soybean	nucleus	15.32	27.16
KRH19281	Soybean	nucleus	17.51	27.08
KRH39656	Soybean	nucleus, plastid	14.65	25.82
KRH64328	Soybean	nucleus	25.76	25.8
KRH53600	Soybean	nucleus	24.92	25.61
Zm00001d002049_P001	Maize	cytosol, plastid	4.21	25.51
KRH47599	Soybean	nucleus	13.47	23.19
KRH06183	Soybean	nucleus	13.64	22.5
KRH76298	Soybean	nucleus	14.48	18.78
KRH65240	Soybean	nucleus	14.31	18.16

Protein Annotations

EntrezGene:100807080	MapMan:15.5.52.1	ncoils:Coil	EnsemblPlantsGene:GLYMA_U028700	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	UniProt:I1M8W0	InterPro:IPR014977
InterPro:IPR014978	EnsemblPlants:KRG88739	ProteinID:KRG88739	ProteinID:KRG88739.1	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951	UniParc:UPI00023D4C68
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_28:+:55902..60128

Molecular Weight (calculated)

64904.1 Da

IEP (calculated)

7.010

GRAVY (calculated)

-0.734

Length

594 amino acids

Sequence
(BLAST)

001: MDLGVVGLEG VVGSESGCVF GSSLASDPET KHKWYGSGVL KQERSAIASE DDEWGTYKVA KIDHDMSSAP KAMIFQQRNN SLLRSNNATL FSDGHHQSQM
101: LSFSSPKSET LLVDTASSNA TLPFSYHQLS SYSRNTGYSS GSISMHGALA GVRGPFTPSQ WMELEHQALI YKYITANMPV PTHLLIPIRK ALDSVGFCNF
201: STGLLRSNSL GWGGFHLGFS NSTDPEPGRC RRTDGKKWRC SRDAVVDQKY CERHMNRGRH RSRKPVEGQS GHALTTTTTT TNTLNASSNS TVVPGNNTFA
301: HNKVHHPLPP NSSPANTINR MFMNNKENNS TSERMEDCSA LPMLPPTLEL KPKEKNNFMI HKHQDPYDES SRNNNEFGLV TSDSLLNPTQ KRSFDSSSSQ
401: KDDSESQQQH SLRHFIDDSP KPPSHNHHRS SSIWPELDNI QSDRTQLSIS IPISSSDFMS FTTSSPSNEK LTLSPLRLSR ALDPIQMGLG VGSGASNEAN
501: PRQANWIPIT WESSMGGPLG EVLNLSNNSN ASDQCGKNNT SALNLMKDDD DDGWDNSPPL GSSPTGVLQK TAFGSLSNSS AGSSPRGAPE NNKE

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.