CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92707
KRG97010
KRH34114
KRH68767

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52910.1	KRG92707	AT5G28640.1	15960617
AT3G52910.1	KRG97010	AT5G28640.1	15960617
AT3G52910.1	KRH34114	AT5G28640.1	15960617
AT3G52910.1	KRH68767	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30830	Soybean	nucleus	87.8	88.06
KRH67865	Soybean	nucleus	63.39	55.47
KRG96154	Soybean	nucleus	63.39	54.9
CDY43721	Canola	nucleus	48.81	46.2
CDX84560	Canola	nucleus	50.6	46.2
Bra023066.1-P	Field mustard	nucleus	50.3	45.92
Bra017240.1-P	Field mustard	nucleus	49.4	45.86
CDX79674	Canola	nucleus	50.0	45.65
CDX67545	Canola	nucleus	49.4	45.6
Bra028541.1-P	Field mustard	nucleus	49.4	45.36
AT3G52910.1	Thale cress	nucleus	51.19	45.26
CDX75039	Canola	nucleus	51.79	45.19
CDY13333	Canola	nucleus	49.11	45.08
AT2G36400.1	Thale cress	nucleus	53.27	44.97
Bra005268.1-P	Field mustard	nucleus	51.79	44.85
CDX84126	Canola	nucleus	51.79	44.39
CDX78132	Canola	nucleus	49.4	44.03
CDX73595	Canola	nucleus	49.7	43.83
Solyc10g083510.1.1	Tomato	nucleus	50.6	43.7
Bra006956.1-P	Field mustard	nucleus	49.11	43.19
PGSC0003DMT400072628	Potato	nucleus	50.0	42.97
Solyc09g009200.1.1	Tomato	nucleus	48.21	42.52
CDX76249	Canola	nucleus	49.4	40.59
GSMUA_Achr3P22790_001	Banana	nucleus	46.13	39.54
GSMUA_Achr8P07650_001	Banana	extracellular	35.12	37.34
Bra019640.1-P	Field mustard	nucleus	48.81	30.48
CDY66284	Canola	nucleus	48.21	30.11
KRH23984	Soybean	nucleus	27.98	28.23
KRH77798	Soybean	nucleus	26.49	27.99
KRH27682	Soybean	nucleus	25.3	27.6
KRH29333	Soybean	nucleus	27.68	27.27
KRH12524	Soybean	nucleus	24.4	22.47
KRH47599	Soybean	nucleus	22.92	22.32
KRH37478	Soybean	nucleus	24.11	22.19
KRH76368	Soybean	nucleus	21.73	21.79
KRH02627	Soybean	nucleus	24.4	21.75
KRH06183	Soybean	nucleus	22.92	21.39
KRH19281	Soybean	nucleus	24.4	21.35
KRH39656	Soybean	nucleus, plastid	21.13	21.07
KRG88739	Soybean	nucleus	34.52	19.53
KRH05542	Soybean	nucleus	34.52	19.33
KRH05543	Soybean	nucleus	34.23	18.88
KRG88736	Soybean	nucleus	33.63	18.86
KRH64328	Soybean	nucleus	32.74	18.55
KRH53600	Soybean	nucleus	31.55	18.34
KRH76298	Soybean	nucleus	20.83	15.28
KRH65240	Soybean	nucleus	20.83	14.96

Protein Annotations

EntrezGene:100814300	MapMan:15.5.52.1	EMBL:ACUP02006148	EnsemblPlantsGene:GLYMA_10G067200	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:K7LHT4	EnsemblPlants:KRH32671	ProteinID:KRH32671	ProteinID:KRH32671.1	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF39	SMART:SM00951	UniParc:UPI000233CF7A
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:6610956..6614235

Molecular Weight (calculated)

37309.5 Da

IEP (calculated)

7.576

GRAVY (calculated)

-0.728

Length

336 amino acids

Sequence
(BLAST)

001: MDLQLKQWRN QHESEQEQEH YSPNMAKFLS QQQHPPPFPS ALPLFVPEQP NTKVSTLSAF SDSTLPSSPR FPRMESCFSF AQWQELELQA LIFRYMLAGA
101: PVPPELLLPI KKSFLQLYHP PNLLESGYYW RREALDPEPG RCRRTDGKKW RCSKDTVAGQ KYCDRHMHRG RNRSRKPVEQ REGSLSAIDS VSSSHSASFN
201: LLHLGQSSAV AKSDSKSLSR NRDHVDGDGK SNGHVLRHFF DDWPRTLQEP DNGESNGSQN NNSGKCLSMS TPGIDPSDVS LKLTTGYGED ACQAASVGGP
301: LAEALRSSTT SSTSSPTSVL LQLPPSSACE TSFIST

Best Arabidopsis Sequence Match ( AT2G36400.1 )
(BLAST)

001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH

Arabidopsis Description

GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.